Umr Marbec

Publications du mois

  • Adous, A.B.J.C., Béarez, P., Owo, N.R., Kouamé, N.E., Durand, J.-D., Adepo-Gourène, A.B., 2025. Allometric relationships in nine species of rays (Elasmobranchii: Batoidea) caught by the Ivorian marine artisanal fishery. Cybium 49, 281–288. doi:10.26028/CYBIUM/2025-033

  • Arnaud-Haond, S., Trouche, B., Liautard-Haag, C., Alain, K., Aubé, J., Bonhomme, F., Brandt, M.I., Caillarec-Joly, A., Cambon, M.-A., Cornette, F., Cueff-Gauchard, V., Durand, P., de Vargas, C., Felix, C., Fuchs, S., Günther, B., Henry, N., Hourdez, S., Jollivet, D., Le Port, A.-S., Lesongeur, F., Maignien, L., Comtet-Marre, S., Matabos, M., Omnes, E., Peyret, P., Pradillon, F., Sarrazin, J., Schauberger, C., Tran Lu Y, A., Ulloa, O., Vaz, S., Zeppili, D., Viard, F., Gavory, F., Gaz, S., Guy, J., Jacoby, E., Oliveira, P.H., Samson, G., Aury, J.-M., Wincker, P., Pesant, S., Poulain, J., Belser, C., 2025. Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects. Nature Scientific Data 12, 1982. doi10.1038/s41597-025-06009-1

  • Arneth, A., Alexander, P., Fuchs, R., Shin, Y.-J., Claudet, J., Coll, M., Leadley, P., Rondinini, C., Rounsevell, M., 2025. The biodiversity-climate-food nexus: Illustrating challenges and solutions using the Green Shoots framework. One Earth 8, 101455. doi:10.1016/j.oneear.2025.101455

  • Beato, S., Sánchez-Baizán, N., Felip, A., Piferrer, F., 2025. Stage-specific transcriptomic and DNA methylation responses to triploidy in European sea bass embryos and larvae. BMC Genomics 26, 1004. doi:10.1186/s12864-025-12220-6

  • Blöcker, A.M., Auch, D., Gutte, H.M., Biederbick, J., Asselot, R., Färber, L., Börner, G., Kamberi, E., Madiraca, F., Ofelio, C., Steidle, L., Moullec, F., 2025. Identifying and addressing the anthropogenic drivers of global change in the North Sea: a systematic map. Environmental Evidence 14, 24. doi:10.1186/s13750-025-00377-2

  • Coulon, N., Feunteun, E., Carpentier, A., Lizé, A., 2025. The Overlooked threat of global warming on elasmobranch fertility. Fish and Fisheries. doi:10.1111/faf.70031

  • Crestel, D., Vergnet, A., Delpuech, E., Leitwein, M., Clota, F., Blanc, M.-O., Navarro, T., Lallement, S., Moulard, F., Ruelle, F., McKenzie, D.J., Vandeputte, M., Allal, F., 2026. Larval survival in European seabass (Dicentrarchus labrax) is shaped by the natural thermal regime of their population of origin and the level of introgression of Atlantic and Mediterranean genomes. Aquaculture 615, 743605. doi:10.1016/j.aquaculture.2025.743605

  • Dalaut, L., Barrier, N., Lengaigne, M., Maury, O., 2026. How contrasted environments in the Humboldt Current System, Pacific Warm Pool and South Pacific Gyre, shape contrasted ecosystems. A modelling approach using APECOSM. Progress in Oceanography 240, 103615. doi:10.1016/j.pocean.2025.103615

  • Darnaude, A.M., Tanner, S.E., Blanco, A., Sturrock, A.M., Seker, Y.T., Pérez-Ruzafa, A., Kotta, J., Guy-Haim, T., Barboza, F.R., Hidalgo, M., Guizien, K., Penca, J., López-López, L., Beger, M., Costantini, F., Arnaud-Haond, S., Riginos, C., Hostens, K., Rilov, G., Katsanevakis, S., Hunter, E., 2026. Shaping research in marine functional connectivity for integrated and effective marine science and management. Biological Reviews. doi:10.1002/brv.70120

  • Delaire, T., Viricel, A., Mourier, J., Auguin, E., Gasco, N., Guinet, C., Tixier, P., 2026. Evidence of long-lasting associations between related and unrelated individuals in a subantarctic killer whale population. Behavioral Ecology and Sociobiology 80, 12. doi:10.1007/s00265-025-03688-z

  • Dorffer, C., Jourdin, F., Nguyen, T.T.N., Devillers, R., Mouillot, D., Fablet, R., 2025. Observation-Only Deep Learning for Gappy Satellite-Derived Ocean Color Data Using 4DVarNet. IEEE Transactions on Geoscience and Remote Sensing 63, 1–12. doi:10.1109/TGRS.2025.3624465

  • Eglaine, Z., Courboulès, J., Cipolletta, F., Roques, C., Soulié, T., Sarno, D., Mostajir, B., Vidussi, F., 2025. Effects of a simulated marine heatwave on the structure and composition of Mediterranean plankton in a mesocosm study. PLOS ONE 20, e0337112. doi:10.1371/journal.pone.0337112

  • Faure, N., Vilcot, M., Pichot, F., Riutort, J.-J., Barroil, A., Holon, F., Tomasi, N., Mouillot, D., Deter, J., Manel, S., 2025. A Fragile Stronghold: Genomics Reveal Angelshark Population Vulnerability in Corsica, a Key Mediterranean Refuge. Ecology and Evolution 15, e72275. doi:10.1002/ece3.72275

  • Ferreira, G.V.B., Schmidt, N., Justino, A.K.S., Fudge, D.S., Lucena-Frédou, F., Eduardo, L.N., Mincarone, M.M., 2026. Buried and forgotten: Plastic contamination in an ancient deep-sea fish lineage. Marine Pollution Bulletin 224, 119099. doi:10.1016/j.marpolbul.2025.119099

  • Fu, C., Cortese, D., Ojelade, O., Munson, A., Gao, L., Fu, S., Nadler, L.E., Killen, S.S., 2025. Not all company is comforting: metabolic consequences of conspecific presence depend on species’ social system in fish. Behav Ecol Sociobiol 79, 120. doi:10.1007/s00265-025-03663-8

  • Galgani, F., Roque d’Orbcastel, E., Bouvier, T., Claro, F., Herman, M., Penno, T., Dupont, E., 2026. Plastic pollution in Leeward, Moorea and Cook islands (South Pacific): A baseline study. Marine Pollution Bulletin 222, 118759. doi:10.1016/j.marpolbul.2025.118759

  • García-Moreiras, I., Amorim, A., Pospelova, V., Zonneveld, K., Anderson, D.M., Beedessee, G., Dale, A., Dale, B., David, O., de Vernal, A., Fatourou, E., Folie-Boivin, E., Helenes, J., García-Portela, M., Gu, F., Gu, H., Iratçabal, V., Janouškovec, J., Limoges, A., Marret, F., Meyvisch, P., Nfongmo, Y.N., Pochic, V., Reguera, B., Sangiorgi, F., Roza, S.E.V., Van Nieuwenhove, N., Williams, R.W., Winifred, V., Mertens, K.N., 2025. Progress, challenges and future directions in marine organic-walled dinoflagellate cyst research: New insights from an international workshop. Marine Micropaleontology 201, 102502. doi:10.1016/j.marmicro.2025.102502

  • Giachini Tosetto, E., Lengaigne, M., Nogueira Junior, M., Lett, C., Neumann-Leitão, S., Bertrand, A., 2025. Global Coastal Biogeographic Boundaries: Unveiling the Nature of Processes Shaping the Distribution of Marine Biodiversity. Diversity and Distributions 31, e70083. doi:10.1111/ddi.70083

  • Guerrero-Peña, L., Suarez-Bregua, P., Sánchez-Baizán, N., Piferrer, F., Tena, J.J., Rotllant, J., 2025. Dna methylation dynamics associated with visual system remodeling during flatfish metamorphosis. Epigenetics & Chromatin 18, 72. doi:10.1186/s13072-025-00638-x

  • Grouazel, M., Desroy, N., Fiandrino, A., Geoffroy, T., Nahon, S., Devillers, S., Callier, M.D., 2026. Benthic ecological changes in response to fish farming waste deposition in tropical environment: combining field and modelling approaches. Marine Pollution Bulletin 222, 118849. doi:10.1016/j.marpolbul.2025.118849

  • Haffray, P., Enez, F., Lorgeoux, B., Thillier, M., Claveau, J.-B., Schembri, F., Blanc, P.P., Rivaton, A., Bugeon, J., Vandeputte, M., 2026. Genetic variation in molting time and its effects on growth and color traits in the Pacific blue shrimp Litopenaeus stylirostris. Aquaculture 614, 743479. doi:10.1016/j.aquaculture.2025.743479

  • Hori, M., Hamaguchi, M., Richard, M., Derolez, V., Lagarde, F. (2025). Positive Effects of Seagrass Beds on Sanitary Conditions in Oyster Aquaculture. In: Bennis, AC., Dauvin, JC., Feunteun, E., Komatsu, T., Matsuda, O., Prouzet, P. (eds) Constraints and Adaptations to Global Change at the Land-Sea Interface: For a Shared Ecological and Energy Transition. COAST 2023. Springer, Cham. doi:10.1007/978-3-031-90050-1_22

  • Jamieson, T., Chitsaz, M., Gobet, A., Waycott, M., Leterme, S.C., 2026. Seasonal Fluctuations of the Seagrass Holobiont under Contrasting Environmental Conditions. Environmental Microbiology Reports 18, e70239. doi:10.1111/1758-2229.70239

  • Landreau, A., Kerzérho, V., Derridj, O., Wendling, B., Cosnard, N., Rouyer, T., 2026. Post-Release Survival of the Pelagic Stingray (Pteroplatytrygon violacea, Bonaparte, 1832) in French Longline Fisheries in the Northwestern Mediterranean Sea. Fisheries Management and Ecology. doi:10.1111/fme.70053

  • Lavesque, N., Happi, J.L.M., Nzigou, A.R., Daffe, G., Daramy, F., Hektoen, M.M., 2025. A new species of Diopatra (Annelida, Onuphidae) from Akanda National Park in Gabon (West Africa). Mar. Biodivers. 55, 94. doi:10.1007/s12526-025-01582-5

  • Lehnhoff, L., Glotin, H., Gall, Y.L., Menut, E., Peltier, H., Pochat, A., Pochat, K., Canneyt, O.V., Mérigot, B., 2025. Whistles characterisation using artificial intelligence reveals responses of short-beaked common dolphins to a bio-inspired acoustic mitigation device for fishing nets. Scientific Reports 15, 40618. doi:10.1038/s41598-025-24256-5

  • Mariani, G., Guiet, J., Bianchi, D., DeVries, T., Barrier, N., Troussellier, M., Mouillot, D., 2025. The combined impact of fisheries and climate change on future carbon sequestration by oceanic macrofauna. Nature Communications 16, 8845. doi:10.1038/s41467-025-64576-8

  • Mayen, J., Polsenaere, P., Regaudie de Gioux, A., Deborde, J., Collin, K., Le Merrer, Y., Foucault, É., Ouisse, V., André, L., Arnaud, M., Kostyrka, P., Lamaud, É., Abril, G., Souchu, P., 2025. Aquatic metabolism influences temporal variations of water carbon and atmospheric carbon dioxide fluxes in a temperate salt marsh. Biogeosciences 22, 5387–5411. doi:10.5194/bg-22-5387-2025

  • Metzl, N., Lo Monaco, C., Tribollet, A., Ternon, J.-F., Chevallier, F., Gehlen, M., 2025. New observations confirm the progressive acidification in the Mozambique Channel. Biogeosciences 22, 7187–7204. doi:10.5194/bg-22-7187-2025

  • McKenzie, D.J., Anttila, K., 2025. Editorial: Patterns, causes and consequences of intraspecific variation in environmental tolerance in fishes. Frontiers in Fish Science 3. doi:10.3389/frish.2025.1672665

  • Meyer, L., Barry, P., Le Moan, A., Arbiol, C., Castilho, R., Van der Lingen, C., Chlaïda, M., McKeown, N., Ernande, B., Bonhomme, F., Gagnaire, P.-A., Guinand, B., 2025. Genome divergence between European anchovy ecotypes fuelled by structural variants originating from trans-equatorial admixture. Proc. Biol. Sci., 292, 20251416. doi:10.1098/rspb.2025.1416

  • Moulin, A., Bec, B., Boutron, O., Derolez, V., Garrido, M., Pasqualini, V., Malet, N., 2026. Climatic and nutrient drivers affect long-term phytoplankton temporal trends in coastal lagoons. Marine Pollution Bulletin 224, 119080. doi:10.1016/j.marpolbul.2025.119080

  • Mouquet, N., Mahaut, L., Thuiller, W., Auber, A., Casajus, N., Enquist, B.J., Gaüzère, P., Loiseau, N., Mouillot, D., Munoz, F., Villéger, S., Violle, C., 2025. Spatial insurance of distinct ecological functions. Ecology Letters 28, e70266. doi:10.1111/ele.70266

  • M’hamdi, A., Koch-Larrouy, A., Costa da Silva, A., Dadou, I., de Macedo, C.R., Bosse, A., Vantrepotte, V., Aguedjou, H.M., Tran, T.-K., Testor, P., Mortier, L., Bertrand, A., Mendes de Castro Melo, P.A., Lee, J., Rollnic, M., Araujo, M., 2025. Impact of internal tides on chlorophyll a distribution and primary production off the Amazon shelf from glider measurements and satellite observations. Ocean Science 21, 2873–2894. doi:10.5194/os-21-2873-2025

  • Navarro, T.P., Thambithurai, D., Duquenne-Delobel, E., Crestel, D., Allal, F., Salou, G., Dutto, G., Blasco, F.R., Bourjea, J., McKenzie, D.J., 2025. Evidence that tolerance of acute warming declines with increasing body mass within fish species. Journal of Experimental Biology 228, jeb250612. doi:10.1242/jeb.250612

  • ECR Spotlight – Théo Navarro and Davide Thambithurai, 2025. . J Exp Biol 228, jeb251419. doi:10.1242/jeb.251419

  • Parmentier, E., Eche, L., Greeven, C., Banse, M., Bertucci, F., Thiry, M., Raick, X., Donaldson, T.J., Lecchini, D., 2025. Morphological innovations and evolutionary transitions in boxfish acoustic communication. Biological Journal of the Linnean Society 146, blaf079. doi:10.1093/biolinnean/blaf079

  • Pelletier, D., Monk, J., Althaus, F., Borremans, C., Hanafi-Portier, M., Scoulding, B., Olu, K., Untiedt, C., Jackett, C., Barrett, N., Laffargue, P., Vaz, S., Hasan, E., Williams, A., 2025. Challenges of reusing marine image-based data for fish and benthic habitat Essential Variables: insights from data producers. Front. Mar. Sci., 12. doi:10.3389/fmars.2025.1676232

  • Pernet, F., Richard, M., Brodu, N., Villeneuve, R., Di Poi, C., Urrutti, P., Koechlin, H., Gazeau, F., 2025. Long-term exposure of bivalves to ocean acidification and warming under ecologically-realistic conditions reveals risks for aquaculture by 2050 in the mediterranean. Earth’s Future 13, e2025EF005992. doi:10.1029/2025EF005992

  • Philippot, K., Rey-Valette, H., Lavoie, J., Bulle, C., Salles, J.M., de Wit, R., Derolez, V., Lautrédou-Audouy, N., Cordonnier, C., Loiseau, E., 2026. A combined territorial life cycle assessment and ecosystem services valuation to analyse the environmental performance of coastal planning scenarios: Insights from a case study in southern France. Environmental Impact Assessment Review 118, 108256. doi:10.1016/j.eiar.2025.108256

  • Pinto, P.I.S., Miglioli, A., LaLone, C.A., Baumann, L., Baynes, A., Blanc-Legendre, M., Cancio, I., Cousin, X., Dang, Z., Dumollard, R., Ford, A.T., Green, C., Iguchi, T., Kearney, P., Knigge, T., Minier, C., Monsinjon, T., Monteiro, M.S., Sturve, J., Watanabe, H., Yamamoto, H., Ankley, G., Power, D.M., Katsiadaki, I., 2025. Prioritising research on endocrine disruption in the marine environment: a global perspective. Biological Reviews. doi:10.1111/brv.70106

  • Ralien, P.R., Corson, M.S., Roucaute, M., Menniti, C., Kabir, K.A., Aubin, J., Nahon, S., 2026. Influence of Divided Ponds on Fish Diets in Polyculture: Insights From Carbon and Nitrogen Stable Isotopes in Trophic Webs. Aquaculture, Fish and Fisheries 6, e70161. doi:10.1002/aff2.70161

  • Robinson, J.P.W., O’Meara, L., Fiorella, K.J., Byrd, K.A., Kjellevold, M., Ansong, R.S., Aura, C.M., Mwirigi, N., Allegretti, A., Karkarey, R., Lamont, T.A.C., Maire, E., Martin, S.M., Omukoto, J.O., Standen, S., Gephart, J.A., Graham, N.A.J., Thilsted, S.H., Hicks, C.C., 2025. Correction for Robinson et al., Dried fish provide widespread access to critical nutrients across Africa. Proceedings of the National Academy of Sciences 122, e2426844122. doi:10.1073/pnas.2531107122

  • Ruiz, E., Lamy, T., Mouillot, D., Durand, J.-D., 2026. Benchmarking the Taxonomic Resolution of Fish eDNA Metabarcodes Against COI Barcodes. Molecular Ecology Resources 26, e70069. doi:10.1111/1755-0998.70069

  • Sanabria-Fernández, J.A., Baselga, A., Lazzari, N., Gómez-Rodríguez, C., Mouillot, D., Edgar, G., Dakos, V., 2025. Thriving Areas in Temperate Coastal Systems: Novel Insights for Marine Conservation. Diversity and Distributions 31, e70091. doi:10.1111/ddi.70091

  • Sánchez-Baizán, N., Allal, F., Vandeputte, M., Piferrer, F., 2025. Multigenerational temperature effects on paternal epigenetic inheritance in European sea bass. Epigenetics & Chromatin 18, 66. doi:10.1186/s13072-025-00630-5

  • Sanchez, L., Loiseau, N., Albouy, C., Bruno, M., Barroil, A., Dalongeville, A., Deter, J., Durand, J.-D., Faure, N., Fopp, F., Hocdé, R., Jaquier, M., Jiddawi, N.S., Jucker, M., Juhel, J.-B., Kadarusman, Marques, V., Mathon, L., Mouillot, D., Orblin, M., Pellissier, L., Seguin, R., Sugeha, H.Y., Valentini, A., Velez, L., Vimono, I.B., Leprieur, F., Manel, S., 2025. eDNA surveys substantially expand known geographic and ecological niche boundaries of marine fishes. PLOS Biology 23, e3003432. doi:10.1371/journal.pbio.3003432

  • Stalder, S., Sanchez, T., Volpi, M., Manel, S., Mouillot, D., Auber, A., Bruno, M., Marques, V., Albouy, C., Pellissier, L., 2025. Zero-shot deep learning for the annotation of unknown eDNA sequences using co-occurrences and phylogenetic embeddings. PLOS Computational Biology 21, e1013776. doi:10.1371/journal.pcbi.1013776

  • Tidd, A., Tolotti, M.T., Guillotreau, P., Barrier, N., Dagorn, L., 2026. Balancing fishing effort along the tropical tuna abundance-size spectrum. Ecological Modelling 514, 111495. doi:10.1016/j.ecolmodel.2026.111495

  • Tran, S.-H., Restrepo-Ortiz, C.X., Vu, D.Q., Troussellier, M., Bettarel, Y., Bouvier, T., Bui, V.N., Minh, N.H., Hoang, T.D., Nguyen, Q.H., Auguet, J.-C., 2025. NEMESISdb: A full length 16S rRNA gene dataset for the detection of human, fish, and crustacean potentially pathogenic bacteria. Data in Brief 63, 112135. doi:10.1016/j.dib.2025.112135

  • Thirunavukkarasu, S., Dahms, H.-U., Rajendran, P., Molinero, J.-C., Ahamed, J.M., Hwang, J.-S., 2025. Shallow hydrothermal vent meso-zooplankton: A systematic review of species composition and community structure. Science of The Total Environment 1004, 180779. doi:10.1016/j.scitotenv.2025.180779

  • Tine, M., D’Cotta, H., Baroiller, J.-F., Lorin-Nebel, C., Guinand, B., 2025. The black-chinned tilapia Sarotherodon melanotheron, a model for environmental genomics and aquaculture resilience in the Western African’s context of climate change. Reviews in Fish Biology and Fisheries 36, 8. doi:10.1007/s11160-025-10009-0

  • Vajas, P., Ricouard, A., Lecomte, J.-B., Brind’Amour, A., Laffargue, P., Mahevas, S., 2025. Description of the monthly spatial dynamics of commercial and bycatch demersal species in the Bay of Biscay. Scientific Data 12, 1585. doi:10.1038/s41597-025-05869-x

  • Veytia, D., Mariani, G., Martí Barclay, V., Airoldi, L., Claudet, J., Cooley, S., Magnan, A., Neill, S., Sumaila, U.R., Thébaud, O., Voolstra, C.R., Williamson, P., Bonnin, M., Langridge, J., Comte, A., Viard, F., Shin, Y.-J., Bopp, L., Gattuso, J.-P., 2025. A machine learning-based evidence map of ocean-related options for climate change mitigation and adaptation. Nature npj Ocean Sustainability 4, 60. doi:10.1038/s44183-025-00159-w

  • Villsen, K., Archambaud-Suard, G., Meglécz, E., Blanchet, S., Balmain, J.-P., Bertrand, M., Chappaz, R., Dubut, V., Corse, E., 2025. Disentangling the Effects of Biotic and Abiotic Dimensions of Ecological Opportunity on Individual Trophic Trait Variation. Molecular Ecology 34, e70115. doi.org/10.1111/mec.70115

  • von Schuckmann, K., Godoy-Faundez, A., Garçon, V., Muller-Karger, F.E., Evans, K., Appeltans, W., Bax, N., Benedetti Cecchi, L., Bernard, A., Bernard, K., Byrnes, J., Canonico, G., Chapuis, L., Clark, M.R., Darnaude, A.M., Davies, C., Englyst, P., Fransson, A., Hallam, S., Heslop, E., Holland, E., Hood, M., Kern, S., Liné, A., Lara-Lopez, A., Loose, N., Martín Míguez, B., McMahon, C.R., Nordlund, L.M., Post, J., Speich, S., Sutton, A., Tanhua, T., Telszewski, M., Poursanidis, D., Yu, W., 2026. Global ocean indicators: Marking pathways at the science-policy nexus. Marine Policy 184, 106922. doi:10.1016/j.marpol.2025.106922

  • Zamborain-Mason, J., Cinner, J.E., MacNeil, M.A., Beger, M., Booth, D., Ferse, S.C.A., Golden, C.D., Graham, N.A.J., Hoey, A.S., Mouillot, D., Connolly, S.R., 2025. Potential yield and food provisioning gains from rebuilding the world’s coral reef fish stocks. Proceedings of the National Academy of Sciences 122, e2508805122. doi:10.1073/pnas.2508805122
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