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  • Jean-Christophe Auguet

Articles dans une revue

2024
A. Legrand, G. Blanvillain, Thibault Deschamps, G. Chapelet, F. Aubret, et al.. TORPP - Turtles, One Health Research & Plastic Pollution: A multidisciplinary consortium to evaluate the environmental and health impact of Micro/NanoPlastics (MNPs) pollution. One Health, 2024, 19, pp.100873. https://nantes-universite.hal.science/hal-04677051v1

2024
Aridane Gonzalez, Oleg Pokrovsky, Yves Auda, Liudmila Shirokova, Jean-Luc Rols, et al.. Trace elements in the water column of high-altitude Pyrenean lakes: Impact of local weathering and long-range atmospheric input. Environmental Pollution, 2024, 342, pp.123098. https://hal.umontpellier.fr/hal-04345733v1

2024
Elena Litchman, Sébastien Villéger, Zinger Lucie, Jean-Christophe Auguet, Wilfried Thuiller, et al.. Refocusing the microbial rare biosphere concept through a functional lens. Trends in Ecology & Evolution, 2024, https://hal.umontpellier.fr/hal-04666177v1

2023
Blandine Trouche, Clemens Schauberger, Feriel Bouderka, Jean-Christophe Auguet, Caroline Belser, et al.. Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications, 2023, 3 (1), pp.133. https://hal.science/hal-04388214v1

2023
Jeanne Naudet, Emmanuelle Roque d'Orbcastel, Thierry Bouvier, Sylvain Godreuil, Sabrina Dyall, et al.. Identifying macroplastic pathobiomes and antibiotic resistance in a subtropical fish farm. Marine Pollution Bulletin, 2023, 194 (Part B.), 115267 (11p.). https://hal.science/hal-04204133v1

2023
Duong Huy Nguyen, Nhat Huy Chu, Yvan Bettarel, Jean-Christophe Auguet, Thierry Bouvier, et al.. Metagenomic data of bacterial communities associated with Acropora species from Phu Quoc Islands, Vietnam. Data in Brief, 2023, 47, pp.108977. https://hal.science/hal-04301281v1

2023
van Ngoc Bui, Duong Huy Nguyen, Nhat Huy Chu, Yvan Bettarel, Jean-Christophe Auguet, et al.. Diversity and Biogeography of Coral Mucus-Associated Bacterial Communities: The Case of Acropora formosa. Journal of Marine Science and Engineering, 2023, 11 (1), pp.74. https://hal.umontpellier.fr/hal-04032712v1

2023
Azibar Rodriguez-Iruretagoiena, Ainara Gredilla, Silvia Fdez-Ortiz De Vallejuelo, Gorka Arana, Maite Meaurio, et al.. Metals and metalloids in high-altitude Pyrenean lakes: sources and distribution in pre-industrial and modern sediments. Environmental Science and Pollution Research, 2023, 30 (37), pp.87561--87574. https://hal.umontpellier.fr/hal-04262705v1

2023
Elsa Gadoin, Christelle Desnues, Emmanuelle Roque d'Orbcastel, Thierry Bouvier, Jean-Christophe Auguet, et al.. The Unseen Microbes in the Gut, Liver and Skin of Tunas. Frontiers for Young Minds, 2023, 11, pp.818373. https://hal.science/hal-04203967v1

2022
Elsa Gadoin, Christelle Desnues, Thierry Bouvier, Emmanuelle Roque d'Orbcastel, Jean-Christophe Auguet, et al.. Tracking spoilage bacteria in the tuna microbiome. FEMS Microbiology Ecology, 2022, 98 (10), pp.fiac110. https://hal.umontpellier.fr/hal-03860695v1

2022
Elsa Gadoin, Christelle Desnues, Emmanuelle Roque d’Orbcastel, Thierry Bouvier, Jean-Christophe Auguet, et al.. Fishing for the Microbiome of Tropical Tuna. Microbial ecology, 2022, https://hal.umontpellier.fr/hal-03823035v1

2022
Arthur Escalas, Jean-Christophe Auguet, Amandine Avouac, Jonathan Belmaker, Thanos Dailianis, et al.. Shift and homogenization of gut microbiome during invasion in marine fishes. Animal Microbiome, 2022, 4 (1), pp.37. https://hal.umontpellier.fr/hal-03691656v1

2021
Marie-Charlotte Cheutin, Sébastien Villéger, Christina C Hicks, James P W Robinson, Nicholas a J Graham, et al.. Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts. Microorganisms, 2021, https://hal.science/hal-03357775v1

2021
Elsa Gadoin, Christelle Desnues, Sonia Monteil-Bouchard, Thierry Bouvier, J.-C. Auguet, et al.. Fishing for the Virome of Tropical Tuna. Viruses, 2021, 13 (7), pp.1291. https://amu.hal.science/hal-03332237v1

2021
Elsa Gadoin, Lucile Durand, Aurélie Guillou, Sandrine Crochemore, Thierry Bouvier, et al.. Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?. Microorganisms, 2021, 9 (6), pp.1157. https://amu.hal.science/hal-03332247v1

2021
Arthur Escalas, Jean-Christophe Auguet, Amandine Avouac, Raphael Seguin, Antoine Gradel, et al.. Ecological Specialization Within a Carnivorous Fish Family Is Supported by a Herbivorous Microbiome Shaped by a Combination of Gut Traits and Specific Diet. Frontiers in Marine Science, 2021, 8, pp.622883. https://hal.umontpellier.fr/hal-03413506v1

2021
Blandine Trouche, Miriam Brandt, Caroline Belser, Covadonga Orejas, Stephane Pesant, et al.. Diversity and biogeography of bathyal and abyssal seafloor bacteria and archaea along a Mediterranean-Atlantic gradient. Frontiers in Microbiology, 2021, 12, pp.702016. https://hal.umontpellier.fr/hal-03589735v1

2021
Simon M. Dittami, Enrique Arboleda, J.-C. Auguet, Arite Bigalke, Enora Briand, et al.. A community perspective on the concept of marine holobionts: current status, challenges, and future directions. PeerJ, 2021, 9, pp.e10911. https://hal.science/hal-03166872v2

2021
Yvan Bettarel, Elyse Boudin, Sébastien Halary, Jean-Christophe Auguet, Jean Péronnin, et al.. The Hungry Snail, the Fragile Coral, and the Friendly Microbe. Frontiers for Young Minds, 2021, 9, pp.573856. https://cnrs.hal.science/hal-03415940v1

2021
Olivier Pereira, Corentin Hochart, Dominique Boeuf, Jean-Christophe Auguet, Didier Debroas, et al.. Seasonality of archaeal proteorhodopsin and associated Marine Group IIb ecotypes (Ca. Poseidoniales) in the North Western Mediterranean Sea. The International Society of Microbiologial Ecology Journal, 2021, 15 (5), pp.1302--1316. https://hal.umontpellier.fr/hal-03415635v1

2020
Marlène Chiarello, J.-C. Auguet, Nicholas Graham, Thomas Claverie, Elliott Sucré, et al.. Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1927), pp.20200642. https://hal.science/hal-03093105v1

2020
Samuel Dupont, A. Lokmer, E. Corre, J.-C. Auguet, Bruno Petton, et al.. Oyster hemolymph is a complex and dynamic ecosystem hosting bacteria, protists and viruses. Animal Microbiome, 2020, 2 (1), pp.12. https://hal.science/hal-02563300v1

2019
Olivier Pereira, Corentin Hochart, J.-C. Auguet, Didier Debroas, Pierre Galand. Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean. MicrobiologyOpen, 2019, 8 (9), pp.e00852. https://hal.science/hal-02283229v1

2019
Etienne Robino, Aurore Poirier, Hajar Amraoui, Sandra Le Bissonnais, Angélique Perret, et al.. Resistance of the oyster pathogen Vibrio tasmaniensis LGP32 against grazing by Vannella sp. marine amoeba involves Vsm and CopA virulence factors. Environmental Microbiology, 2019, 22, pp.4183 - 4197. https://hal.science/hal-02388995v1

2019
Magali Ranchou‐peyruse, J.-C. Auguet, Camille Mazière, Claudia Ximena Restrepo‐ortiz, Marion Guignard, et al.. Geological gas‐storage shapes deep life. Environmental Microbiology, 2019, 21 (10), pp.3953-3964. |. https://univ-pau.hal.science/hal-02282469v1

2018
Yvan Bettarel, Sebastien Halary, J.-C. Auguet, Thanh Chi Mai, Ngoc Van Bui, et al.. Corallivory and the microbial debacle in two branching scleractinians. The International Society of Microbiologial Ecology Journal, 2018, 12 (4), pp.1109--1126. https://hal.science/hal-01826712v1

2018
Marta Sebastian, J.-C. Auguet, Claudia Ximena Restrepo-Ortiz, Maria Montserrat Sala, Celia Marrase, et al.. Deep ocean prokaryotic communities are remarkably malleable when facing long-term starvation. Environmental Microbiology, 2018, 20 (2), pp.713-723. https://hal.science/hal-01826732v1

2018
Marlene Chiarello, J.-C. Auguet, Yvan Bettarel, Corinne Bouvier, Thomas Claverie, et al.. Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet. Microbiome, 2018, 6, https://hal.umontpellier.fr/hal-02002252v1

2018
Sergi Compte-Port, Carles M Borrego, Hélène Moussard, Mathilde Jeanbille, Claudia Ximena Restrepo-Ortiz, et al.. Metal contaminations impact archaeal community composition, abundance and function in remote alpine lakes. Environmental Microbiology, 2018, 20, pp.2422-2437. https://hal.science/hal-01836458v1

2018
Pierre E. Galand, Olivier Pereira, Corentin Hochart, J.-C. Auguet, Didier Debroas. A strong link between marine microbial community composition and function challenges the idea of functional redundancy. The International Society of Microbiologial Ecology Journal, 2018, 12 (10), pp.2470-2478. https://hal.umontpellier.fr/hal-02002181v1

2017
Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, J.-C. Auguet, Thierry Bouvier. Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals. Scientific Reports, 2017, 7 (1), https://hal.umontpellier.fr/hal-01929494v1

2016
Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczynski, Hélène Agogué, et al.. Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats. Frontiers in Microbiology, 2016, 7, pp.1637. https://hal.sorbonne-universite.fr/hal-01417951v1

2016
Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczynski, Jean-François Ghiglione, et al.. Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments. Frontiers in Microbiology, 2016, 7, pp.1303. https://hal.sorbonne-universite.fr/hal-01599382v2

2016
Mireia Fillol, J.-C. Auguet, Emilio Casamayor, Carles M Borrego. Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage. The International Society of Microbiologial Ecology Journal, 2016, 10 (3), pp.665 - 677. https://hal.umontpellier.fr/hal-01922815v1

2016
Simon Roux, Francois Enault, Viviane Ravet, Jonathan Colombet, Yvan Bettarel, et al.. Analysis of metagenomic data reveals common features of halophilic viral communities across continents. Environmental Microbiology, 2016, 18 (3), pp.889 - 903. https://pasteur.hal.science/pasteur-01375524v1

2015
Hugo Sarmento, Emilio Casamayor, J.-C. Auguet, Maria Vila-Costa, Marisol Felip, et al.. Microbial food web components, bulk metabolism, and single-cell physiology of piconeuston in surface microlayers of high-altitude lakes. Frontiers in Microbiology, 2015, 6, pp.361. https://hal.umontpellier.fr/hal-01841336v1

36 article(s)

Autres publications

2024
Gwenn Pulliat, Jean-Christophe Auguet. Résistons ! Le parcours des bactéries pathogènes dans les fermes aquacoles. 2024. https://hal.science/hal-04728394v1

2023
Gwenn Pulliat, Sylvain Théry, Christian Culas, Kim Hanh Nguyen, Hoang Son Tran, et al.. Exploring the food system & global health nexus: The case of aquaculture practices and the risk of antimicrobial resistance in the Nha Trang bay (Vietnam). Conference of the Canadian Council for South East Asian Studies (CCSEAS), Oct 2023, Québec (Canada), Université Laval, Canada. https://hal.science/hal-04455665v1

2 article(s)

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