Virginie Marques

Articles dans une revue

2025
Romane Rozanski, David Eme, Eilish Richards, Marie‐emilie Deschez, Marta Rufino, et al.. ATL_FISHREF: A 12S mitochondrial reference dataset for metabarcoding Atlantic fishes frequently caught during scientific surveys in the Bay of Biscay. Ecological Research, 2025, https://hal.inrae.fr/hal-05057921v1

2025
Franck Pichot, David Mouillot, Jean-Baptiste Juhel, Alicia Dalongeville, Olivier Adam, et al.. Mediterranean islands as refugia for elasmobranch and threatened fishes. Diversity and Distributions, 2025, 31 (2), pp.e13937. https://hal.umontpellier.fr/hal-04824360v1

2024
Mélissa Jaquier, Camille Albouy, Wilhelmine Bach, Conor Waldock, Virginie Marques, et al.. Environmental DNA recovers fish composition turnover of the coral reefs of West Indian Ocean islands. Ecology and Evolution, 2024, 14 (5), pp.e11337. https://hal.umontpellier.fr/hal-04666178v1

2023
Laetitia Mathon, Virginie Marques, Stéphanie Manel, Camille Albouy, Marco Andrello, et al.. The distribution of coastal fish eDNA sequences in the Anthropocene. Global Ecology and Biogeography, 2023, https://hal.umontpellier.fr/hal-04146566v1

2023
Marion Muff, Mélissa Jaquier, Virginie Marques, Laurent Ballesta, Julie Deter, et al.. Environmental DNA highlights fish biodiversity in mesophotic ecosystems. Environmental DNA, 2023, 5 (1), pp.56-72. https://hal.science/hal-04118681v1

2023
Agnès Duhamet, Camille Albouy, Virginie Marques, Stéphanie Manel, David Mouillot. The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding. Ecology and Evolution, 2023, 13 (1), pp.e9672. https://hal.umontpellier.fr/hal-04032735v1

2022
Alicia Dalongeville, Emilie Boulanger, Virginie Marques, Eric Charbonnel, Virginie Hartmann, et al.. Benchmarking eleven biodiversity indicators based on environmental DNA surveys: More diverse functional traits and evolutionary lineages inside marine reserves. Journal of Applied Ecology, 2022, 59 (11), pp.2803-2813. https://hal.science/hal-03892475v1

2022
Jean‐baptiste Juhel, Virginie Marques, Rizkie Satriya Utama, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Estimating the extended and hidden species diversity from environmental DNA in hyper‐diverse regions. Ecography, 2022, 2022 (10), pp.e06299. https://hal.umontpellier.fr/hal-03823160v1

2022
Andrea Polanco F., Conor Waldock, Thomas Keggin, Virginie Marques, Romane Rozanski, et al.. Ecological indices from environmental DNA to contrast coastal reefs under different anthropogenic pressures. Ecology and Evolution, 2022, 12 (8), https://hal.umontpellier.fr/hal-03821106v1

2022
Laëtitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1973), pp.20220162. https://hal.umontpellier.fr/hal-03669624v1

2022
Madeline Steinberg, Jean-Baptiste Juhel, Virginie Marques, Clara Péron, Régis Hocdé, et al.. Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 2022, 169 (1), pp.15. https://hal.umontpellier.fr/hal-03566643v1

2022
Bastien Macé, Régis Hocdé, Virginie Marques, Pierre-Edouard Guerin, Alice Valentini, et al.. Evaluating bioinformatics pipelines for population-level inference using environmental DNA. Environmental DNA, 2022, 4 (3), pp.674-686. https://hal.science/hal-04395283v1

2021
Andrea Polanco Fernández, Maria Mutis Martinezguerra, Virginie Marques, Francisco Villa‐navarro, Giomar Helena Borrero Pérez, et al.. Detecting aquatic and terrestrial biodiversity in a tropical estuary using environmental DNA. Biotropica, 2021, 53 (6), pp.1606-1619. https://hal.science/hal-04203573v1

2021
Salomé Stauffer, Meret Jucker, Thomas Keggin, Virginie Marques, Marco Andrello, et al.. How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?. Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03415700v1

2021
Andrea Polanco Fernández, Virginie Marques, Fabian Fopp, Jean-Baptiste Juhel, Giomar Helena Borrero-Pérez, et al.. Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes. Environmental DNA, 2021, The future of biodiversity monitoring and conservation utilizing environmental DNA, 3 (1), pp.142-156. https://hal.inrae.fr/hal-03810224v1

2021
David Mouillot, Jean-Baptiste Juhel, Virginie Marques, Tristan Milhau, Camille Albouy, et al.. GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding. Diversity and Distributions, 2021, Environmental DNA‐based biodiversity assessment and conservation management in the Anthropocene, 27 (10), pp.1880-1892. https://hal.umontpellier.fr/hal-03415605v1

2021
Virginie Marques, Paul Castagne, Andrea Polanco Fernandez, Giomar Helena Borrero-Perez, Régis Hocdé, et al.. Use of environmental DNA in assessment of fish functional and phylogenetic diversity. Conservation Biology, 2021, https://hal.umontpellier.fr/hal-03451172v1

2021
Jean-Baptiste Juhel, Virginie Marques, Andrea Polanco Fernandez, Giomar H. Borrero-Perez, Maria Mutis Martinezguerra, et al.. Detection of the elusive Dwarf sperm whale (Kogia sima) using environmental DNA at Malpelo island (Eastern Pacific, Colombia). Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03413614v1

2020
Virginie Marques, Pierre-Edouard Guerin, Mathieu Rocle, Alice Valentini, Stephanie Manel, et al.. Blind assessment of vertebrate taxonomic diversity across spatial scales by clustering environmental DNA metabarcoding sequences. Ecography, 2020, pp.1779-1790. https://hal.umontpellier.fr/hal-03411045v1

2020
Jean-Baptiste Juhel, Rizkie Satriya Utama, Virginie Marquès, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1930), pp.20200248. https://hal.science/hal-02900375v1

2019
Jean-Baptiste Juhel, Eva Maire, Elliott Sucre, Marie-Charlotte Cheutin, Virginie Marquès, et al.. From the cradle to the grave: Green turtle hatchlings (Chelonia mydas) preyed upon by two-spots red snappers (Lutjanus bohar). Food Webs, 2019, 21, pp.e00129. https://hal.umontpellier.fr/hal-02413819v1

2019
Stéphanie Manel, Nicolas Loiseau, Marco Andrello, Katharina Fietz, Raquel Goñi, et al.. Long-Distance Benefits of Marine Reserves: Myth or Reality?. Trends in Ecology & Evolution, 2019, 34 (4), pp.342-354. https://univ-perp.hal.science/hal-02331101v1

2017
Pablo Brosset, Jean-Marc Fromentin, Elisabeth van Beveren, Josep Lloret, Virginie Marques, et al.. Spatio-temporal patterns and environmental controls of small pelagic fish body condition from contrasted Mediterranean areas. Progress in Oceanography, 2017, 151, pp.149 - 162. https://amu.hal.science/hal-01621733v1

2016
Pablo Brosset, Josep Lloret, Marta Munoz, Christian Fauvel, Elisabeth van Beveren, et al.. Body reserves mediate trade-offs between life-history traits: new insights from small pelagic fish reproduction. Royal Society Open Science, 2016, 3 (10), pp.160202. https://hal.science/hal-01443227v1

24 article(s)

Autres publications

2021
Laetitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Circumglobal distribution of fish environmental DNA in coral reefs. ARPHA Conference, ARPHA Conference Abstracts, 4, e64792 [3 p.], 2021, https://hal.science/hal-03414805v1

2020
Virginie Marques. Nécessité, potentiel et limitations de l’approche en unités taxonomiques moléculaires pour analyser la biodiversité de l’ADN environnemental des poissons. Sciences agricoles. Université Montpellier, 2020. Français. https://theses.hal.science/tel-03209995v1

2 article(s)