Articles dans une revue
2025
Adrien Tran Lu Y, Stéphanie Ruault, Claire Daguin-Thiébaut, Anne‐sophie Le Port, Marion Ballenghien, et al.. Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents. Molecular Biology and Evolution, 2025, 42 (2), pp.msaf024. https://hal.science/hal-04973623v2
2024
Chrystelle Delord, Sophie Arnaud‐haond, Agostino Leone, Jonathan Rolland, Natacha Nikolic. Unraveling the Complexity of the Ne/Nc Ratio for Conservation of Large and Widespread Pelagic Fish Species: Current Status and Challenges. Evolutionary Applications, 2024, 17 (10), https://hal.science/hal-04733640v1
2024
Agostino Leone, Sophie Arnaud-Haond, Massimiliano Babbucci, Luca Bargelloni, Ilaria Coscia, et al.. Population Genomics of the Blue Shark, Prionace glauca , Reveals Different Populations in the Mediterranean Sea and the Northeast Atlantic. Evolutionary Applications, 2024, 17 (9), pp.e70005. https://hal.science/hal-04728339v1
2024
Diego Elihú Rivera Rosas, Nathan R. Geraldi, Ronnie N. Glud, Kazumasa Oguri, Sophie Arnaud-Haond, et al.. A sedimentary DNA record of the Atacama Trench reveals biodiversity changes in the most productive marine ecosystem. Global Change Biology, 2024, 30 (7), e17412 (20p.). https://hal.science/hal-04692821v1
2024
Babett Günther, Nicolas Bierne, Philippe Borsa, Cécile Perrin, Olivier Ripoll, et al.. Citizen science approach for genetic species identification in a local French seafood speciality. International Journal of Gastronomy and Food Science, 2024, 35, pp.100823. https://hal.umontpellier.fr/hal-04345754v1
2024
Didier Aurelle, Anne Haguenauer, Chloé Blaise, Lauric Reynes, Sophie Arnaud-Haond, et al.. On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios. Zoologica Scripta, 2024, 53 (2), pp.235-247. https://hal.inrae.fr/hal-04354995v1
2024
Clemens Schauberger, Bo Thamdrup, Clarisse Lemonnier, Blandine Trouche, Julie Poulain, et al.. Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions. ISME Communications, 2024, 4 (1), pp.ycad005. https://hal.umontpellier.fr/hal-04492228v1
2023
Blandine Trouche, Clemens Schauberger, Feriel Bouderka, Jean-Christophe Auguet, Caroline Belser, et al.. Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications, 2023, 3 (1), pp.133. https://hal.science/hal-04388214v1
2023
Natalia Díaz-Arce, Pierre‐alexandre Gagnaire, David Richardson, John Walter, Sophie Arnaud-Haond, et al.. Unidirectional trans‐Atlantic gene flow and a mixed spawning area shape the genetic connectivity of Atlantic bluefin tuna. Molecular Ecology, 2023, 33 (1), https://hal.umontpellier.fr/hal-04403897v1
2023
Fatemeh Parvizi, Arash Akbarzadeh, Ahmad Farhadi, Sophie Arnaud-Haond, Mohammad Sharif Ranjbar. Expression pattern of genes involved in biomineralization in black and orange mantle tissues of pearl oyster, Pinctada persica. Frontiers in Marine Science, 2023, 9, https://hal.umontpellier.fr/hal-04032806v1
2023
Natacha Nikolic, Floriaan Devloo-Delva, Diane Bailleul, Ekaterina Noskova, Clément Rougeux, et al.. Stepping up to genome scan allows stock differentiation in the worldwide distributed blue shark Prionace glauca. Molecular Ecology, 2023, 32 (5), pp.1000-1019. https://hal.umontpellier.fr/hal-03992991v1
2023
Mohamad Hassan, Sara Teixeira, Carole Decker, Sandra Fuchs, Olivier Mouchel, et al.. High connectivity among Vesicomyid bivalves from cold seeps and deep-sea fans of Congo. Deep Sea Research Part I: Oceanographic Research Papers, 2023, 201, pp.104174. https://hal.umontpellier.fr/hal-04262723v1
2023
Márcio a G Coelho, Gareth A Pearson, Joana R H Boavida, Diogo Paulo, Didier Aurelle, et al.. Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification. Ecology and Evolution, 2023, 13 (1), https://hal.science/hal-03962833v1
2022
Térence Legrand, Anne Chenuil, Enrico Ser-Giacomi, Sophie Arnaud-Haond, Nicolas Bierne, et al.. Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla. Nature Communications, 2022, 13, pp.5861. https://hal.science/hal-03871531v1
2022
Ioannis Konstantinidis, Georgios A. Gkafas, Vasillis Papathanasiou, Sotiris Orfanidis, Frithjof C. Kupper, et al.. Biogeography pattern of the marine angiosperm Cymodocea nodosa in the eastern Mediterranean Sea related to the quaternary climatic changes. Ecology and Evolution, 2022, 12 (5), e8911 (12p.). https://hal.science/hal-04203807v1
2022
Cédric Boulart, Olivier Rouxel, Carla Scalabrin, Pierre Le Meur, Ewan Pelleter, et al.. Active hydrothermal vents in the Woodlark Basin may act as dispersing centres for hydrothermal fauna. Communications Earth & Environment, 2022, 3, pp.64. https://hal.science/hal-03611693v1
2022
Tristan Cordier, Inès Barrenechea Angeles, Nicolas Henry, Franck Lejzerowicz, Cédric Berney, et al.. Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. Science Advances , 2022, 8 (5), https://hal.science/hal-03561462v1
2022
Babett Günther, Sophie Marre, Clémence Defois, Thomas Merzi, Philippe Blanc, et al.. Capture by hybridization for full‐length barcode‐based eukaryotic and prokaryotic biodiversity inventories of deep sea ecosystems. Molecular Ecology Resources, 2022, 22 (2), pp.623-637. https://hal.inrae.fr/hal-03416627v1
2022
Audrey M. Darnaude, Sophie Arnaud-Haond, Ewan Hunter, Oscar Gaggiotti, Anna Sturrock, et al.. Unifying approaches to Functional Marine Connectivity for improved marine resource management: the European SEA-UNICORN COST Action. Research Ideas and Outcomes, 2022, 8, pp.e80223. https://hal.umontpellier.fr/hal-03622224v1
2022
Térence Legrand, Anne Chenuil, Enrico Ser-Giacomi, Sophie Arnaud-Haond, Nicolas Bierne, et al.. Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla. Nature Communications, 2022, 13 (5861), https://hal.science/hal-03783749v1
2022
Babett Günther, Eve Jourdain, Lindsay Rubincam, Richard Karoliussen, Sam L. Cox, et al.. Feces DNA analyses track the rehabilitation of a free-ranging beluga whale. Scientific Reports, 2022, 12 (1), pp.6412. https://hal.umontpellier.fr/hal-03708535v1
2022
Adrien Tran Y. Lu, Stephanie Ruault, Claire Daguin-Thiébaut, Jade Castel, Nicolas Bierne, et al.. Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei. Molecular Ecology, 2022, 31 (10), pp.2796-2813. https://hal.umontpellier.fr/hal-03669635v1
2021
Miriam Brandt, Blandine Trouche, Laure Quintric, Babett Günther, Patrick Wincker, et al.. Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding. Molecular Ecology Resources, 2021, 21 (6), pp.1904-1921. https://hal.science/hal-04203425v1
2021
Solenn Stoeckel, Barbara Porro, Sophie Arnaud‐haond. The discernible and hidden effects of clonality on the genotypic and genetic states of populations: Improving our estimation of clonal rates. Molecular Ecology Resources, 2021, 21 (4), pp.1068-1084. https://hal.inrae.fr/hal-03288922v1
2021
Miriam I Brandt, Florence Pradillon, Blandine Trouche, Nicolas Henry, Cathy Liautard-Haag, et al.. Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA. Scientific Reports, 2021, 11 (1), pp.7856. https://hal.sorbonne-universite.fr/hal-03198097v1
2021
Babett Günther, Jean-Marc Fromentin, Luisa Metral, Sophie Arnaud-Haond. Metabarcoding confirms the opportunistic foraging behaviour of Atlantic bluefin tuna and reveals the importance of gelatinous prey. PeerJ, 2021, 9, pp.e11757. https://hal.umontpellier.fr/hal-03413535v1
2021
Blandine Trouche, Miriam Brandt, Caroline Belser, Covadonga Orejas, Stephane Pesant, et al.. Diversity and biogeography of bathyal and abyssal seafloor bacteria and archaea along a Mediterranean-Atlantic gradient. Frontiers in Microbiology, 2021, 12, pp.702016. https://hal.umontpellier.fr/hal-03589735v1
2021
Alexander Jueterbock, Bernardo Duarte, James Coyer, Jeanine L. Olsen, Martina Elisabeth Luise Kopp, et al.. Adaptation of Temperate Seagrass to Arctic Light Relies on Seasonal Acclimatization of Carbon Capture and Metabolism. Frontiers in Plant Science, 2021, 12, pp.745855. https://hal.umontpellier.fr/hal-03589731v1
2021
Clemens Schauberger, Ronnie N. Glud, Bela Hausmann, Blandine Trouche, Lois Maignien, et al.. Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients.. The International Society of Microbiologial Ecology Journal, 2021, 15, pp.3455-3467. https://hal.umontpellier.fr/hal-03415694v1
2021
Bo Thamdrup, Clemens Schauberger, Morten Larsen, Blandine Trouche, Lois Maignien, et al.. Anammox bacteria drive fixed nitrogen loss in hadal trench sediments. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (46), pp.e2104529118. https://hal.umontpellier.fr/hal-03589734v1
2021
Magali Combes, Sandrine Vaz, Anthony Grehan, Telmo Morato, Sophie Arnaud-Haond, et al.. Systematic Conservation Planning at an Ocean Basin Scale: Identifying a Viable Network of Deep-Sea Protected Areas in the North Atlantic and the Mediterranean. Frontiers in Marine Science, 2021, 8, pp.611358. https://hal.umontpellier.fr/hal-03411116v1
2020
Natacha Nikolic, Iratxe Montes, Maxime Lalire, Alexis Puech, Nathalie Bodin, et al.. Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology. Scientific Reports, 2020, 10 (1), https://hal.science/hal-03117810v1
2020
Sophie Arnaud‐haond, Solenn Stoeckel, Diane Bailleul. New insights into the population genetics of partially clonal organisms: When seagrass data meet theoretical expectations. Molecular Ecology, 2020, 29 (17), pp.3248-3260. https://hal.inrae.fr/hal-02937568v1
2020
Jose Manuel Gonzalez-Irusta, Sophie Arnaud-Haond, Covadonga Orejas, Patricia Puerta, Clare Johnson, et al.. Influence of Water Masses on the Biodiversity and Biogeography of Deep-Sea Benthic Ecosystems in the North Atlantic. Frontiers in Marine Science, 2020, 7, pp.239. https://hal.umontpellier.fr/hal-03411053v1
2020
Telmo Morato, Jose-Manuel Gonzalez-Irusta, Carlos Dominguez-Carrio, Chih-Lin Wei, Andrew Davies, et al.. Climate-induced changes in the suitable habitat of cold-water corals and commercially important deep-sea fishes in the North Atlantic. Global Change Biology, 2020, https://hal.umontpellier.fr/hal-03411040v1
2020
Alexander Jueterbock, Christoffer Bostrom, James A. Coyer, Jeanine L. Olsen, Martina Kopp, et al.. The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots. Frontiers in Plant Science, 2020, 11, pp.571646. https://hal.umontpellier.fr/hal-03410896v1
2020
Miriam Brandt, Blandine Trouche, Nicolas Henry, Cathy Liautard-Haag, Lois Maignien, et al.. An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities. Frontiers in Marine Science, 2020, 7, pp.234. https://hal.umontpellier.fr/hal-03410860v1
2019
Joana Ruela Heimbürger Boavida, Ronan Becheler, Marvin Choquet, Norbert Frank, Marco Taviani, et al.. Out of the Mediterranean? Post-glacial colonisation pathways varied among cold-water coral species. Journal of Biogeography, 2019, 46 (5), pp.915-931. https://hal.science/hal-03043708v1
2019
Florentine Riquet, Cathy Liautard‐haag, Lucy Woodall, Carmen Bouza, Patrick Louisy, et al.. Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages. Evolution - International Journal of Organic Evolution, 2019, 73 (4), pp.817-835. https://hal.science/hal-02395914v1
2019
Perrine Cruaud, Carole Decker, Karine Olu, Sophie Arnaud-Haond, Claire Papot, et al.. Ecophysiological differences between vesicomyid species and metabolic capabilities of their symbionts influence distribution patterns of the deep-sea clams. Marine Ecology, 2019, 40 (3), pp.e12541. https://hal.science/hal-02403268v1
2018
Diane Bailleul, Alicia Mackenzie, Olivier Sacchi, Francois Poisson, Nicolas Bierne, et al.. Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the ``grey zone'' of differentiation?. Evolutionary Applications, 2018, 11 (5), pp.614-630. https://hal.umontpellier.fr/hal-02002468v1
2017
J. S. Davies, Brigitte Guillaumont, Fernando Tempera, A. Vertino, L. Beuck, et al.. A new classification scheme of European cold-water coral habitats: implications for ecosystem-based management of the deep sea. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.102-109. https://hal.science/hal-04201870v1
2017
Anthony Grehan, Sophie Arnaud-Haond, Gianfranco D’onghia, Alessandra Savini, Chris Yesson. Towards ecosystem based management and monitoring of the deep Mediterranean, North-East Atlantic and Beyond. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.1 - 7. https://hal.umontpellier.fr/hal-01929332v1
2017
Sophie Arnaud-Haond, Inge van den Beld, Ronan Becheler, C. Orejas, Lenaick Menot, et al.. Two “pillars” of cold-water coral reefs along Atlantic European margins: Prevalent association of Madrepora oculata with Lophelia pertusa , from reef to colony scale. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.110 - 119. https://hal.umontpellier.fr/hal-01929361v1
2017
Inge van den Beld, Brigitte Guillaumont, Lenaick Menot, Christophe Bayle, Sophie Arnaud-Haond, et al.. Marine litter in submarine canyons of the Bay of Biscay. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.142-152. https://hal.science/hal-04200825v1
2017
Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Molecular Ecology Resources, 2017, 17 (6), pp.e251-e267. https://hal.science/hal-01608371v1
2017
Ronan Becheler, Anne-Laure Cassone, Philippe Noël, Olivier Mouchel, Cheryl Morrison, et al.. Low incidence of clonality in cold water corals revealed through the novel use of a standardized protocol adapted to deep sea sampling. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.120 - 130. https://hal.umontpellier.fr/hal-01929375v1
2017
Dominique A. Cowart, Lucile Durand, Marie-Anne Cambon-Bonavita, Sophie Arnaud-Haond. Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering. PLoS ONE, 2017, 12 (3), pp.e0172543. https://hal.science/hal-01927192v1
2017
Inge van den Beld, Jean-Francois Bourillet, Sophie Arnaud-Haond, Laurent de Chambure, Jaime S Davies, et al.. Cold-water coral habitats in submarine canyons of the Bay of Biscay. Frontiers in Marine Science, 2017, 4 (118), pp.1-30. https://hal.science/hal-04201866v1
2016
Nicolas Bierne, François Bonhomme, Sophie Arnaud-Haond. Editorial Dedicated population genomics for the silent world: the specific questions of marine population genetics. Current zoology, 2016, 62 (6), pp.545-550. https://hal.umontpellier.fr/hal-03035902v1
2016
Katja Reichel, Jean-Pierre Masson, Florent Malrieu, Sophie Arnaud-Haond, Solenn Stoeckel. Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms.. BMC Genetics, 2016, 17 (1), pp.76. https://hal.science/hal-01345820v1
2016
Diane Bailleul, Solenn Stoeckel, Sophie Arnaud-Haond. RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets in r .. Methods in Ecology and Evolution, 2016, 7 (8), pp.966 - 970. https://hal.umontpellier.fr/hal-01926159v1
2016
Anne.-Leila Meistertzheim, Franck Lartaud, Sophie Arnaud-Haond, Dimitri Kalenitchenko, Manon Bessalam, et al.. Patterns of bacteria-host associations suggest different ecological\r\nstrategies between two reef building cold-water coral species. Deep Sea Research Part I: Oceanographic Research Papers, 2016, 114, pp.12-22. https://univ-perp.hal.science/hal-01380580v1
2016
Mohammad Sharif Ranjbar, Hossein Zolgharnien, Vahid Yavari, Bita Archangi, Mohammad Ali Salari, et al.. Rising the Persian Gulf Black-Lip Pearl Oyster to the Species Level: Fragmented Habitat and Chaotic Genetic Patchiness in Pinctada persica. Evolutionary Biology, 2016, 43 (1), pp.131 - 143. https://hal.umontpellier.fr/hal-01922707v1
2016
Mélodie Dubois, Vincent Rossi, Enrico Ser-Giacomi, Sophie Arnaud-Haond, Cristóbal López, et al.. Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems. Global Ecology and Biogeography Letters, 2016, 25 (5), pp.503 - 515. https://univ-perp.hal.science/hal-01282085v1
2015
Lucile Durand, Marie Roumagnac, Valérie Cueff-Gauchard, Cyrielle Jan, Mathieu Guri, et al.. Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites. FEMS Microbiology Ecology, 2015, 91 (10), https://hal.umontpellier.fr/hal-01922089v1
2015
Pierre-Alexandre Gagnaire, Thomas Broquet, Didier Aurelle, Frédérique Viard, Ahmed Souissi, et al.. Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era. Evolutionary Applications, 2015, 8 (8), pp.769-786. https://hal.sorbonne-universite.fr/hal-01187735v1
2015
Tania Aires, Yann Moalic, Ester A. Serrao, Sophie Arnaud-Haond. Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae (Caulerpa). FEMS Microbiology Ecology, 2015, pp.91(7). https://hal.science/hal-01180766v1
2015
Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, Didier Aurelle, et al.. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Molecular Ecology, 2015, 24 (3), pp.525-544. https://hal.science/hal-04200555v1
2015
Dominique A. Cowart, Miguel Pinheiro, Olivier Mouchel, Marion Maguer, Jacques Grall, et al.. Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities. PLoS ONE, 2015, 10 (2), pp.e0117562. https://hal.umontpellier.fr/hal-01840066v1
2015
Mikko Kivelä, Sophie Arnaud-Haond, Jari Saramäki. EDENetworks: A user-friendly software to build and analyse networks in biogeography, ecology and population genetics. Molecular Ecology Resources, 2015, 15 (1), pp.117--122. https://hal.umontpellier.fr/hal-01840065v1
61 article(s)
Autres publications
2024
Amélie Rudler, Y.A. Tran Lu, Nicolas Bierne, Sophie Arnaud-Haond, Jean-François Allienne, et al.. Nanopore sequencing reveals the incredible haplotypic diversity of PRDM9 (AMELIE RUDLER, PRIX DE LA MEILLEURE PRESENTATION DES DOCTORANTS). 7ème Rencontres Bioinformatiques IFremer et Nanopore Marine Day, IFREMER, Sep 2024, La Tremblade, France. https://hal.science/hal-04883965v1
2021
Sophie Arnaud-Haond. The promise and limits of DNA based approach to infer diet flexibility in endangered top predators. 2021, pp.100090. https://hal.science/hal-03465071v1
2020
Sophie Arnaud-Haond, Corinne Vacher. Marine holobiont in the high throughput sequencing era. 2020, pp.100045. https://hal.science/hal-02611936v1
2020
Francois Poisson, Sophie Arnaud-Haond, Luisa Metral, Blandine Brisset, Jim Ellis, et al.. How to Reduce the Impacts of the French Mediterranean Longline Fisheries on the Megafauna? Preliminary Results of the SELPAL/RéPAST Projects.. Ceccaldi HJ., Hénocque Y., Komatsu T., Prouzet P., Sautour B., Yoshida J. (eds) Evolution of Marine Coastal Ecosystems under the Pressure of Global Changes. Springer, Cham. Print ISBN 978-3-030-43483-0 Online ISBN 978-3-030-43484-7. pp 509-513, 2020, https://hal.science/hal-04309629v1
2019
Barbara Porro, Neil Alloncle, Nicolas Bierne, Sophie Arnaud-Haond. Connectivité et protection de la biodiversité marine. 2019. https://hal.science/hal-02404006v1
2019
Joana Ruela Heimbürger Boavida, Ronan Becheler, Anna Maria Addamo, Florent Sylvestre, Sophie Arnaud-Haond. 31 Past, Present and Future Connectivity of Mediterranean Cold-Water Corals: Patterns, Drivers and Fate in a Technically and Environmentally Changing World. Mediterranean Cold-Water Corals: Past, Present and Future, pp.357-372, 2019, https://hal.science/hal-03043770v1
https://ird.hal.science/hal-04309596
2018
Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two time steps. Jacques Monod conference \"Sex uncovered: the evolutionary biology of reproductive systems\", Apr 2018, Roscoff, France. https://hal.science/hal-03336667v1
2016
Diane Bailleul, Sophie Arnaud-Haond. New insights into the population genetics of partiallyclonal organisms: when seagrass data meettheoretical expectations. Colloque international de la Société français d'écologie SFECOLOGIE 2016, Oct 2016, Marseille, France. https://hal.inrae.fr/hal-02740273v1
2016
Diane Bailleul, Alicia Mackenzie, Olivier Sacchi, Francois Pompanon, Sophie Arnaud-Haond. Vast panmixia in the widely distributed blue shark (Prionace glauca). iMarCo, Jun 2016, Saint Andrews, United Kingdom. https://hal.inrae.fr/hal-02796134v1
2016
Cindy Lee van Dover, Sophie Arnaud-Haond, Malcolm R. Clark, Samantha Smith, Andrew D. Thaler, et al.. Application of Biological Studies to Governance and Management of the Deep Sea. Biological Sampling in the Deep Sea. 2016. Malcolm R. Clark Mireille Consalvey Ashley A. Rowden (Eds). Print ISBN:9780470656747, Online ISBN:9781118332535, DOI:10.1002/9781118332535. Chap.18, pp.404-430, 2016, https://hal.science/hal-04309652v1
2016
Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate 1.01. 2016. https://hal.science/hal-01608300v1
2015
Catherine Breton, Sophie Arnaud‐haond. Metabarcode and co-occurrence networks reveal the impact of disturbances on communities associated with Zoostera seagrass meadows. Journées Ouvertes de Bioinformatique et Mathiques JOBIM 2015 Clermont Ferrand, Jul 2015, Clermont-Ferrand, France. 2015. https://hal.science/hal-04642145v1
13 article(s)
2025
Adrien Tran Lu Y, Stéphanie Ruault, Claire Daguin-Thiébaut, Anne‐sophie Le Port, Marion Ballenghien, et al.. Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents. Molecular Biology and Evolution, 2025, 42 (2), pp.msaf024. https://hal.science/hal-04973623v2
2024
Chrystelle Delord, Sophie Arnaud‐haond, Agostino Leone, Jonathan Rolland, Natacha Nikolic. Unraveling the Complexity of the Ne/Nc Ratio for Conservation of Large and Widespread Pelagic Fish Species: Current Status and Challenges. Evolutionary Applications, 2024, 17 (10), https://hal.science/hal-04733640v1
2024
Agostino Leone, Sophie Arnaud-Haond, Massimiliano Babbucci, Luca Bargelloni, Ilaria Coscia, et al.. Population Genomics of the Blue Shark, Prionace glauca , Reveals Different Populations in the Mediterranean Sea and the Northeast Atlantic. Evolutionary Applications, 2024, 17 (9), pp.e70005. https://hal.science/hal-04728339v1
2024
Diego Elihú Rivera Rosas, Nathan R. Geraldi, Ronnie N. Glud, Kazumasa Oguri, Sophie Arnaud-Haond, et al.. A sedimentary DNA record of the Atacama Trench reveals biodiversity changes in the most productive marine ecosystem. Global Change Biology, 2024, 30 (7), e17412 (20p.). https://hal.science/hal-04692821v1
2024
Babett Günther, Nicolas Bierne, Philippe Borsa, Cécile Perrin, Olivier Ripoll, et al.. Citizen science approach for genetic species identification in a local French seafood speciality. International Journal of Gastronomy and Food Science, 2024, 35, pp.100823. https://hal.umontpellier.fr/hal-04345754v1
2024
Didier Aurelle, Anne Haguenauer, Chloé Blaise, Lauric Reynes, Sophie Arnaud-Haond, et al.. On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios. Zoologica Scripta, 2024, 53 (2), pp.235-247. https://hal.inrae.fr/hal-04354995v1
2024
Clemens Schauberger, Bo Thamdrup, Clarisse Lemonnier, Blandine Trouche, Julie Poulain, et al.. Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions. ISME Communications, 2024, 4 (1), pp.ycad005. https://hal.umontpellier.fr/hal-04492228v1
2023
Blandine Trouche, Clemens Schauberger, Feriel Bouderka, Jean-Christophe Auguet, Caroline Belser, et al.. Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments. ISME Communications, 2023, 3 (1), pp.133. https://hal.science/hal-04388214v1
2023
Natalia Díaz-Arce, Pierre‐alexandre Gagnaire, David Richardson, John Walter, Sophie Arnaud-Haond, et al.. Unidirectional trans‐Atlantic gene flow and a mixed spawning area shape the genetic connectivity of Atlantic bluefin tuna. Molecular Ecology, 2023, 33 (1), https://hal.umontpellier.fr/hal-04403897v1
2023
Fatemeh Parvizi, Arash Akbarzadeh, Ahmad Farhadi, Sophie Arnaud-Haond, Mohammad Sharif Ranjbar. Expression pattern of genes involved in biomineralization in black and orange mantle tissues of pearl oyster, Pinctada persica. Frontiers in Marine Science, 2023, 9, https://hal.umontpellier.fr/hal-04032806v1
2023
Natacha Nikolic, Floriaan Devloo-Delva, Diane Bailleul, Ekaterina Noskova, Clément Rougeux, et al.. Stepping up to genome scan allows stock differentiation in the worldwide distributed blue shark Prionace glauca. Molecular Ecology, 2023, 32 (5), pp.1000-1019. https://hal.umontpellier.fr/hal-03992991v1
2023
Mohamad Hassan, Sara Teixeira, Carole Decker, Sandra Fuchs, Olivier Mouchel, et al.. High connectivity among Vesicomyid bivalves from cold seeps and deep-sea fans of Congo. Deep Sea Research Part I: Oceanographic Research Papers, 2023, 201, pp.104174. https://hal.umontpellier.fr/hal-04262723v1
2023
Márcio a G Coelho, Gareth A Pearson, Joana R H Boavida, Diogo Paulo, Didier Aurelle, et al.. Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification. Ecology and Evolution, 2023, 13 (1), https://hal.science/hal-03962833v1
2022
Térence Legrand, Anne Chenuil, Enrico Ser-Giacomi, Sophie Arnaud-Haond, Nicolas Bierne, et al.. Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla. Nature Communications, 2022, 13, pp.5861. https://hal.science/hal-03871531v1
2022
Ioannis Konstantinidis, Georgios A. Gkafas, Vasillis Papathanasiou, Sotiris Orfanidis, Frithjof C. Kupper, et al.. Biogeography pattern of the marine angiosperm Cymodocea nodosa in the eastern Mediterranean Sea related to the quaternary climatic changes. Ecology and Evolution, 2022, 12 (5), e8911 (12p.). https://hal.science/hal-04203807v1
2022
Cédric Boulart, Olivier Rouxel, Carla Scalabrin, Pierre Le Meur, Ewan Pelleter, et al.. Active hydrothermal vents in the Woodlark Basin may act as dispersing centres for hydrothermal fauna. Communications Earth & Environment, 2022, 3, pp.64. https://hal.science/hal-03611693v1
2022
Tristan Cordier, Inès Barrenechea Angeles, Nicolas Henry, Franck Lejzerowicz, Cédric Berney, et al.. Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. Science Advances , 2022, 8 (5), https://hal.science/hal-03561462v1
2022
Babett Günther, Sophie Marre, Clémence Defois, Thomas Merzi, Philippe Blanc, et al.. Capture by hybridization for full‐length barcode‐based eukaryotic and prokaryotic biodiversity inventories of deep sea ecosystems. Molecular Ecology Resources, 2022, 22 (2), pp.623-637. https://hal.inrae.fr/hal-03416627v1
2022
Audrey M. Darnaude, Sophie Arnaud-Haond, Ewan Hunter, Oscar Gaggiotti, Anna Sturrock, et al.. Unifying approaches to Functional Marine Connectivity for improved marine resource management: the European SEA-UNICORN COST Action. Research Ideas and Outcomes, 2022, 8, pp.e80223. https://hal.umontpellier.fr/hal-03622224v1
2022
Térence Legrand, Anne Chenuil, Enrico Ser-Giacomi, Sophie Arnaud-Haond, Nicolas Bierne, et al.. Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla. Nature Communications, 2022, 13 (5861), https://hal.science/hal-03783749v1
2022
Babett Günther, Eve Jourdain, Lindsay Rubincam, Richard Karoliussen, Sam L. Cox, et al.. Feces DNA analyses track the rehabilitation of a free-ranging beluga whale. Scientific Reports, 2022, 12 (1), pp.6412. https://hal.umontpellier.fr/hal-03708535v1
2022
Adrien Tran Y. Lu, Stephanie Ruault, Claire Daguin-Thiébaut, Jade Castel, Nicolas Bierne, et al.. Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei. Molecular Ecology, 2022, 31 (10), pp.2796-2813. https://hal.umontpellier.fr/hal-03669635v1
2021
Miriam Brandt, Blandine Trouche, Laure Quintric, Babett Günther, Patrick Wincker, et al.. Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding. Molecular Ecology Resources, 2021, 21 (6), pp.1904-1921. https://hal.science/hal-04203425v1
2021
Solenn Stoeckel, Barbara Porro, Sophie Arnaud‐haond. The discernible and hidden effects of clonality on the genotypic and genetic states of populations: Improving our estimation of clonal rates. Molecular Ecology Resources, 2021, 21 (4), pp.1068-1084. https://hal.inrae.fr/hal-03288922v1
2021
Miriam I Brandt, Florence Pradillon, Blandine Trouche, Nicolas Henry, Cathy Liautard-Haag, et al.. Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA. Scientific Reports, 2021, 11 (1), pp.7856. https://hal.sorbonne-universite.fr/hal-03198097v1
2021
Babett Günther, Jean-Marc Fromentin, Luisa Metral, Sophie Arnaud-Haond. Metabarcoding confirms the opportunistic foraging behaviour of Atlantic bluefin tuna and reveals the importance of gelatinous prey. PeerJ, 2021, 9, pp.e11757. https://hal.umontpellier.fr/hal-03413535v1
2021
Blandine Trouche, Miriam Brandt, Caroline Belser, Covadonga Orejas, Stephane Pesant, et al.. Diversity and biogeography of bathyal and abyssal seafloor bacteria and archaea along a Mediterranean-Atlantic gradient. Frontiers in Microbiology, 2021, 12, pp.702016. https://hal.umontpellier.fr/hal-03589735v1
2021
Alexander Jueterbock, Bernardo Duarte, James Coyer, Jeanine L. Olsen, Martina Elisabeth Luise Kopp, et al.. Adaptation of Temperate Seagrass to Arctic Light Relies on Seasonal Acclimatization of Carbon Capture and Metabolism. Frontiers in Plant Science, 2021, 12, pp.745855. https://hal.umontpellier.fr/hal-03589731v1
2021
Clemens Schauberger, Ronnie N. Glud, Bela Hausmann, Blandine Trouche, Lois Maignien, et al.. Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients.. The International Society of Microbiologial Ecology Journal, 2021, 15, pp.3455-3467. https://hal.umontpellier.fr/hal-03415694v1
2021
Bo Thamdrup, Clemens Schauberger, Morten Larsen, Blandine Trouche, Lois Maignien, et al.. Anammox bacteria drive fixed nitrogen loss in hadal trench sediments. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (46), pp.e2104529118. https://hal.umontpellier.fr/hal-03589734v1
2021
Magali Combes, Sandrine Vaz, Anthony Grehan, Telmo Morato, Sophie Arnaud-Haond, et al.. Systematic Conservation Planning at an Ocean Basin Scale: Identifying a Viable Network of Deep-Sea Protected Areas in the North Atlantic and the Mediterranean. Frontiers in Marine Science, 2021, 8, pp.611358. https://hal.umontpellier.fr/hal-03411116v1
2020
Natacha Nikolic, Iratxe Montes, Maxime Lalire, Alexis Puech, Nathalie Bodin, et al.. Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology. Scientific Reports, 2020, 10 (1), https://hal.science/hal-03117810v1
2020
Sophie Arnaud‐haond, Solenn Stoeckel, Diane Bailleul. New insights into the population genetics of partially clonal organisms: When seagrass data meet theoretical expectations. Molecular Ecology, 2020, 29 (17), pp.3248-3260. https://hal.inrae.fr/hal-02937568v1
2020
Jose Manuel Gonzalez-Irusta, Sophie Arnaud-Haond, Covadonga Orejas, Patricia Puerta, Clare Johnson, et al.. Influence of Water Masses on the Biodiversity and Biogeography of Deep-Sea Benthic Ecosystems in the North Atlantic. Frontiers in Marine Science, 2020, 7, pp.239. https://hal.umontpellier.fr/hal-03411053v1
2020
Telmo Morato, Jose-Manuel Gonzalez-Irusta, Carlos Dominguez-Carrio, Chih-Lin Wei, Andrew Davies, et al.. Climate-induced changes in the suitable habitat of cold-water corals and commercially important deep-sea fishes in the North Atlantic. Global Change Biology, 2020, https://hal.umontpellier.fr/hal-03411040v1
2020
Alexander Jueterbock, Christoffer Bostrom, James A. Coyer, Jeanine L. Olsen, Martina Kopp, et al.. The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots. Frontiers in Plant Science, 2020, 11, pp.571646. https://hal.umontpellier.fr/hal-03410896v1
2020
Miriam Brandt, Blandine Trouche, Nicolas Henry, Cathy Liautard-Haag, Lois Maignien, et al.. An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities. Frontiers in Marine Science, 2020, 7, pp.234. https://hal.umontpellier.fr/hal-03410860v1
2019
Joana Ruela Heimbürger Boavida, Ronan Becheler, Marvin Choquet, Norbert Frank, Marco Taviani, et al.. Out of the Mediterranean? Post-glacial colonisation pathways varied among cold-water coral species. Journal of Biogeography, 2019, 46 (5), pp.915-931. https://hal.science/hal-03043708v1
2019
Florentine Riquet, Cathy Liautard‐haag, Lucy Woodall, Carmen Bouza, Patrick Louisy, et al.. Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages. Evolution - International Journal of Organic Evolution, 2019, 73 (4), pp.817-835. https://hal.science/hal-02395914v1
2019
Perrine Cruaud, Carole Decker, Karine Olu, Sophie Arnaud-Haond, Claire Papot, et al.. Ecophysiological differences between vesicomyid species and metabolic capabilities of their symbionts influence distribution patterns of the deep-sea clams. Marine Ecology, 2019, 40 (3), pp.e12541. https://hal.science/hal-02403268v1
2018
Diane Bailleul, Alicia Mackenzie, Olivier Sacchi, Francois Poisson, Nicolas Bierne, et al.. Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the ``grey zone'' of differentiation?. Evolutionary Applications, 2018, 11 (5), pp.614-630. https://hal.umontpellier.fr/hal-02002468v1
2017
J. S. Davies, Brigitte Guillaumont, Fernando Tempera, A. Vertino, L. Beuck, et al.. A new classification scheme of European cold-water coral habitats: implications for ecosystem-based management of the deep sea. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.102-109. https://hal.science/hal-04201870v1
2017
Anthony Grehan, Sophie Arnaud-Haond, Gianfranco D’onghia, Alessandra Savini, Chris Yesson. Towards ecosystem based management and monitoring of the deep Mediterranean, North-East Atlantic and Beyond. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.1 - 7. https://hal.umontpellier.fr/hal-01929332v1
2017
Sophie Arnaud-Haond, Inge van den Beld, Ronan Becheler, C. Orejas, Lenaick Menot, et al.. Two “pillars” of cold-water coral reefs along Atlantic European margins: Prevalent association of Madrepora oculata with Lophelia pertusa , from reef to colony scale. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.110 - 119. https://hal.umontpellier.fr/hal-01929361v1
2017
Inge van den Beld, Brigitte Guillaumont, Lenaick Menot, Christophe Bayle, Sophie Arnaud-Haond, et al.. Marine litter in submarine canyons of the Bay of Biscay. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.142-152. https://hal.science/hal-04200825v1
2017
Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Molecular Ecology Resources, 2017, 17 (6), pp.e251-e267. https://hal.science/hal-01608371v1
2017
Ronan Becheler, Anne-Laure Cassone, Philippe Noël, Olivier Mouchel, Cheryl Morrison, et al.. Low incidence of clonality in cold water corals revealed through the novel use of a standardized protocol adapted to deep sea sampling. Deep Sea Research Part II: Topical Studies in Oceanography, 2017, 145, pp.120 - 130. https://hal.umontpellier.fr/hal-01929375v1
2017
Dominique A. Cowart, Lucile Durand, Marie-Anne Cambon-Bonavita, Sophie Arnaud-Haond. Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering. PLoS ONE, 2017, 12 (3), pp.e0172543. https://hal.science/hal-01927192v1
2017
Inge van den Beld, Jean-Francois Bourillet, Sophie Arnaud-Haond, Laurent de Chambure, Jaime S Davies, et al.. Cold-water coral habitats in submarine canyons of the Bay of Biscay. Frontiers in Marine Science, 2017, 4 (118), pp.1-30. https://hal.science/hal-04201866v1
2016
Nicolas Bierne, François Bonhomme, Sophie Arnaud-Haond. Editorial Dedicated population genomics for the silent world: the specific questions of marine population genetics. Current zoology, 2016, 62 (6), pp.545-550. https://hal.umontpellier.fr/hal-03035902v1
2016
Katja Reichel, Jean-Pierre Masson, Florent Malrieu, Sophie Arnaud-Haond, Solenn Stoeckel. Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms.. BMC Genetics, 2016, 17 (1), pp.76. https://hal.science/hal-01345820v1
2016
Diane Bailleul, Solenn Stoeckel, Sophie Arnaud-Haond. RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets in r .. Methods in Ecology and Evolution, 2016, 7 (8), pp.966 - 970. https://hal.umontpellier.fr/hal-01926159v1
2016
Anne.-Leila Meistertzheim, Franck Lartaud, Sophie Arnaud-Haond, Dimitri Kalenitchenko, Manon Bessalam, et al.. Patterns of bacteria-host associations suggest different ecological\r\nstrategies between two reef building cold-water coral species. Deep Sea Research Part I: Oceanographic Research Papers, 2016, 114, pp.12-22. https://univ-perp.hal.science/hal-01380580v1
2016
Mohammad Sharif Ranjbar, Hossein Zolgharnien, Vahid Yavari, Bita Archangi, Mohammad Ali Salari, et al.. Rising the Persian Gulf Black-Lip Pearl Oyster to the Species Level: Fragmented Habitat and Chaotic Genetic Patchiness in Pinctada persica. Evolutionary Biology, 2016, 43 (1), pp.131 - 143. https://hal.umontpellier.fr/hal-01922707v1
2016
Mélodie Dubois, Vincent Rossi, Enrico Ser-Giacomi, Sophie Arnaud-Haond, Cristóbal López, et al.. Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems. Global Ecology and Biogeography Letters, 2016, 25 (5), pp.503 - 515. https://univ-perp.hal.science/hal-01282085v1
2015
Lucile Durand, Marie Roumagnac, Valérie Cueff-Gauchard, Cyrielle Jan, Mathieu Guri, et al.. Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites. FEMS Microbiology Ecology, 2015, 91 (10), https://hal.umontpellier.fr/hal-01922089v1
2015
Pierre-Alexandre Gagnaire, Thomas Broquet, Didier Aurelle, Frédérique Viard, Ahmed Souissi, et al.. Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era. Evolutionary Applications, 2015, 8 (8), pp.769-786. https://hal.sorbonne-universite.fr/hal-01187735v1
2015
Tania Aires, Yann Moalic, Ester A. Serrao, Sophie Arnaud-Haond. Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae (Caulerpa). FEMS Microbiology Ecology, 2015, pp.91(7). https://hal.science/hal-01180766v1
2015
Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, Didier Aurelle, et al.. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Molecular Ecology, 2015, 24 (3), pp.525-544. https://hal.science/hal-04200555v1
2015
Dominique A. Cowart, Miguel Pinheiro, Olivier Mouchel, Marion Maguer, Jacques Grall, et al.. Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities. PLoS ONE, 2015, 10 (2), pp.e0117562. https://hal.umontpellier.fr/hal-01840066v1
2015
Mikko Kivelä, Sophie Arnaud-Haond, Jari Saramäki. EDENetworks: A user-friendly software to build and analyse networks in biogeography, ecology and population genetics. Molecular Ecology Resources, 2015, 15 (1), pp.117--122. https://hal.umontpellier.fr/hal-01840065v1
61 article(s)
Autres publications
2024
Amélie Rudler, Y.A. Tran Lu, Nicolas Bierne, Sophie Arnaud-Haond, Jean-François Allienne, et al.. Nanopore sequencing reveals the incredible haplotypic diversity of PRDM9 (AMELIE RUDLER, PRIX DE LA MEILLEURE PRESENTATION DES DOCTORANTS). 7ème Rencontres Bioinformatiques IFremer et Nanopore Marine Day, IFREMER, Sep 2024, La Tremblade, France. https://hal.science/hal-04883965v1
2021
Sophie Arnaud-Haond. The promise and limits of DNA based approach to infer diet flexibility in endangered top predators. 2021, pp.100090. https://hal.science/hal-03465071v1
2020
Sophie Arnaud-Haond, Corinne Vacher. Marine holobiont in the high throughput sequencing era. 2020, pp.100045. https://hal.science/hal-02611936v1
2020
Francois Poisson, Sophie Arnaud-Haond, Luisa Metral, Blandine Brisset, Jim Ellis, et al.. How to Reduce the Impacts of the French Mediterranean Longline Fisheries on the Megafauna? Preliminary Results of the SELPAL/RéPAST Projects.. Ceccaldi HJ., Hénocque Y., Komatsu T., Prouzet P., Sautour B., Yoshida J. (eds) Evolution of Marine Coastal Ecosystems under the Pressure of Global Changes. Springer, Cham. Print ISBN 978-3-030-43483-0 Online ISBN 978-3-030-43484-7. pp 509-513, 2020, https://hal.science/hal-04309629v1
2019
Barbara Porro, Neil Alloncle, Nicolas Bierne, Sophie Arnaud-Haond. Connectivité et protection de la biodiversité marine. 2019. https://hal.science/hal-02404006v1
2019
Joana Ruela Heimbürger Boavida, Ronan Becheler, Anna Maria Addamo, Florent Sylvestre, Sophie Arnaud-Haond. 31 Past, Present and Future Connectivity of Mediterranean Cold-Water Corals: Patterns, Drivers and Fate in a Technically and Environmentally Changing World. Mediterranean Cold-Water Corals: Past, Present and Future, pp.357-372, 2019, https://hal.science/hal-03043770v1
https://ird.hal.science/hal-04309596
2018
Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two time steps. Jacques Monod conference \"Sex uncovered: the evolutionary biology of reproductive systems\", Apr 2018, Roscoff, France. https://hal.science/hal-03336667v1
2016
Diane Bailleul, Sophie Arnaud-Haond. New insights into the population genetics of partiallyclonal organisms: when seagrass data meettheoretical expectations. Colloque international de la Société français d'écologie SFECOLOGIE 2016, Oct 2016, Marseille, France. https://hal.inrae.fr/hal-02740273v1
2016
Diane Bailleul, Alicia Mackenzie, Olivier Sacchi, Francois Pompanon, Sophie Arnaud-Haond. Vast panmixia in the widely distributed blue shark (Prionace glauca). iMarCo, Jun 2016, Saint Andrews, United Kingdom. https://hal.inrae.fr/hal-02796134v1
2016
Cindy Lee van Dover, Sophie Arnaud-Haond, Malcolm R. Clark, Samantha Smith, Andrew D. Thaler, et al.. Application of Biological Studies to Governance and Management of the Deep Sea. Biological Sampling in the Deep Sea. 2016. Malcolm R. Clark Mireille Consalvey Ashley A. Rowden (Eds). Print ISBN:9780470656747, Online ISBN:9781118332535, DOI:10.1002/9781118332535. Chap.18, pp.404-430, 2016, https://hal.science/hal-04309652v1
2016
Ronan Becheler, Jean-Pierre Masson, Sophie Arnaud-Haond, Fabien Halkett, Stéphanie Mariette, et al.. ClonEstiMate 1.01. 2016. https://hal.science/hal-01608300v1
2015
Catherine Breton, Sophie Arnaud‐haond. Metabarcode and co-occurrence networks reveal the impact of disturbances on communities associated with Zoostera seagrass meadows. Journées Ouvertes de Bioinformatique et Mathiques JOBIM 2015 Clermont Ferrand, Jul 2015, Clermont-Ferrand, France. 2015. https://hal.science/hal-04642145v1
13 article(s)