Articles dans une revue
2024
Ulysse Flandrin, David Mouillot, Camille Albouy, Sonia Bejarano, Nicolas Casajus, et al.. Fish communities can simultaneously contribute to nature and people across the world's tropical reefs. One Earth, 2024, 7 (10), pp.1772-1785. https://hal.science/hal-04746202v1
2024
Nicolas Loiseau, David Mouillot, Laure Velez, Raphaël Seguin, Nicolas Casajus, et al.. Inferring the extinction risk of marine fish to inform global conservation priorities. PLoS Biology, 2024, 22 (8), pp.e3002773. https://hal.science/hal-04689827v1
2024
Camille Magneville, Capucine Brissaud, Valentine Fleuré, Nicolas Loiseau, Thomas Claverie, et al.. A new framework for estimating abundance of animals using a network of cameras. Limnology and Oceanography: Methods, 2024, 22 (4), pp.268-280. https://hal.science/hal-04731255v1
2024
Camille Magneville, Solène Dedieu, Nicolas Loiseau, Thomas Claverie, Sébastien Villéger. Detecting benefits of protection level on diversity facets in a sea of temporal scarcity. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, https://hal.umontpellier.fr/hal-04431971v1
2024
Julie Deter, Laurent Ballesta, Adèle Barroil, Guilhem Marre, Nadia Faure, et al.. Gigantic breeding colonies of a marine fish in the Mediterranean. Current Biology, 2024, 34 (18), pp.R852-R853. https://hal.umontpellier.fr/hal-04754482v1
2024
Valentine Fleuré, Camille Magneville, David Mouillot, Sébastien Villéger. Automated identification of invasive rabbitfishes in underwater images from the Mediterranean Sea. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, 34 (1), pp.e4073. https://hal.science/hal-04491791v1
2024
Elena Litchman, Sébastien Villéger, Zinger Lucie, Jean-Christophe Auguet, Wilfried Thuiller, et al.. Refocusing the microbial rare biosphere concept through a functional lens. Trends in Ecology & Evolution, 2024, https://hal.umontpellier.fr/hal-04666177v1
2024
Núria Teixidó, Jérémy Carlot, Samir Alliouane, Enric Ballesteros, Cinzia de Vittor, et al.. Functional changes across marine habitats due to ocean\r\nacidification. Global Change Biology, 2024, 30 (1), pp.170105. https://hal.science/hal-04417178v1
2023
Camille Magneville, Thomas Claverie, Sébastien Villéger. Remote video surveys unveil the diurnal variability of trophic-based processes by fishes on coral reefs. Coral Reefs, 2023, 43 (2), pp.253-263. https://hal.science/hal-04645517v1
2023
Sébastien Villéger, Camille Magneville, Fany Roncin, Lise Retailleau, Thomas Claverie. Behavior of reef fishes during a submarine magnitude 5 earthquake. Ecology, 2023, 104 (10), pp.e4148. https://hal.science/hal-04248123v1
2023
Céline Condachou, Tristan Milhau, Jérôme Murienne, Sébastien Brosse, Sébastien Villéger, et al.. Inferring functional diversity from environmental DNA metabarcoding. Environmental DNA, 2023, 5 (5), pp.934-944. https://hal.science/hal-04269097v1
2023
Nina Schiettekatte, Jordan Casey, Simon Brandl, Alexandre Mercière, Sam Degregori, et al.. The role of fish feces for nutrient cycling on coral reefs. Oikos, 2023, https://hal.umontpellier.fr/hal-04163907v1
2023
Marie Gimenez, Sébastien Villéger, Gaêl Grenouillet, Julien Cucherousset. Stocking practices shape the taxonomic and functional diversity of fish communities in gravel pit lakes. Fisheries Management and Ecology, 2023, https://hal.umontpellier.fr/hal-04104169v1
2022
Camille Magneville, Marie‐lou Leréec Le Bricquir, Thanos Dailianis, Grigorios Skouradakis, Thomas Claverie, et al.. Long‐duration remote underwater videos reveal that grazing by fishes is highly variable through time and dominated by non‐indigenous species. Remote Sensing in Ecology and Conservation, 2022, https://hal.umontpellier.fr/hal-03858677v1
2022
Nina M D Schiettekatte, Francesca Conte, Beverly French, Simon J Brandl, Christopher J Fulton, et al.. Combining stereo‐video monitoring and physiological trials to estimate reef fish metabolic demands in the wild. Ecology and Evolution, 2022, 12, https://hal.science/hal-03798478v1
2022
Gonzalo Pérez‐rosales, Michel Pichon, Héloïse Rouzé, Sébastien Villéger, Gergely Torda, et al.. Mesophotic coral ecosystems of French Polynesia are hotspots of alpha and beta generic diversity for scleractinian assemblages. Diversity and Distributions, 2022, 28, pp.1391 - 1403. https://hal.science/hal-03798538v1
2022
Joshua Cinner, Jessica Zamborain-Mason, Eva Maire, Andrew Hoey, Nicholas A.J. Graham, et al.. Linking key human-environment theories to inform the sustainability of coral reefs. Current Biology, 2022, 32 (12), pp.2610-2620. https://hal.science/hal-03798539v1
2022
Marlene Chiarello, Mark Mccauley, Sébastien Villéger, Colin R. Jackson. Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold. PLoS ONE, 2022, 17 (2), pp.e0264443. https://hal.umontpellier.fr/hal-03669633v1
2022
Guohuan Su, Pablo A. Tedesco, Aurele Toussaint, Sébastien Villéger, Sebastien Brosse. Contemporary environment and historical legacy explain functional diversity of freshwater fishes in the world rivers. Global Ecology and Biogeography, 2022, https://hal.umontpellier.fr/hal-03622229v1
2022
Nicolas Loiseau, Sébastien Villéger, Charles Le Bozec, Marie Gimenez, Seiji Léo Kawahara, et al.. Mesophotic reefs are not refugia for neither taxonomic nor functional diversity of reef fishes. Coral Reefs, 2022, https://hal.umontpellier.fr/hal-03860627v1
2022
Arthur Escalas, Amandine Avouac, Jonathan Belmaker, Thierry Bouvier, Valentin Clédassou, et al.. An invasive herbivorous fish (Siganus rivulatus) influences both benthic and planktonic microbes through defecation and nutrient excretion. Science of the Total Environment, 2022, 838 (3), pp.156207. https://hal.science/hal-03798650v1
2022
Arthur Escalas, Jean-Christophe Auguet, Amandine Avouac, Jonathan Belmaker, Thanos Dailianis, et al.. Shift and homogenization of gut microbiome during invasion in marine fishes. Animal Microbiome, 2022, 4 (1), pp.37. https://hal.umontpellier.fr/hal-03691656v1
2022
Nina Schiettekatte, Simon Brandl, Jordan Casey, Nicholas Graham, Diego Barneche, et al.. Biological trade-offs underpin coral reef ecosystem functioning. Nature Ecology & Evolution, 2022, 6, pp.701-708. https://unc.hal.science/hal-03637887v1
2022
Madeline Steinberg, Jean-Baptiste Juhel, Virginie Marques, Clara Péron, Régis Hocdé, et al.. Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 2022, 169 (1), pp.15. https://hal.umontpellier.fr/hal-03566643v1
2022
Camille Magneville, Nicolas Loiseau, Camille Albouy, Nicolas Casajus, Thomas Claverie, et al.. mFD: an R package to compute and illustrate the multiple facets of functional diversity. Ecography, 2022, 2022 (1), https://hal.umontpellier.fr/hal-03566638v1
2021
Sébastien Brosse, Nicolas Charpin, Guohuan Su, Aurèle Toussaint, Guido Herrera-R, et al.. FISHMORPH: A global database on morphological traits of freshwater fishes. Global Ecology and Biogeography, 2021, 30 (12), pp.2330-2336. https://hal.science/hal-03754045v1
2021
Jacob E. Allgeier, Brian C. Weeks, Katrina S. Munsterman, Nina Wale, Seth J. Wenger, et al.. Phylogenetic conservatism drives nutrient dynamics of coral reef fishes. Nature Communications, 2021, 12 (1), pp.5432. https://hal.umontpellier.fr/hal-03451166v1
2021
David Mouillot, Nicolas Loiseau, Matthias Grenié, Adam Algar, Michele Allegra, et al.. The dimensionality and structure of species trait spaces. Ecology Letters, 2021, 24 (9), pp.1988-2009. https://hal.science/hal-03405358v1
2021
Marie-Charlotte Cheutin, Sébastien Villéger, Christina C Hicks, James P W Robinson, Nicholas a J Graham, et al.. Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts. Microorganisms, 2021, 9, https://cnrs.hal.science/hal-03415928v1
2021
Daphna Shapiro Goldberg, Gil Rilov, Sébastien Villéger, Jonathan Belmaker. Predation Cues Lead to Reduced Foraging of Invasive Siganus rivulatus in the Mediterranean. Frontiers in Marine Science, 2021, 8, pp.678848. https://hal.umontpellier.fr/hal-03413533v1
2021
Sébastien Villon, Corina Iovan, Morgan Mangeas, Thomas Claverie, David Mouillot, et al.. Automatic underwater fish species classification with limited data using few-shot learning. Ecological Informatics, 2021, 63, pp.101320. https://hal.umontpellier.fr/hal-03415715v1
2021
Matthew Mclean, Rick Stuart-Smith, Sébastien Villéger, Arnaud Auber, Graham Edgar, et al.. Trait similarity in reef fish faunas across the world’s oceans. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (12), pp.e2012318118. https://hal.science/hal-03435832v1
2021
Guohuan Su, Maxime Logez, Jun Xu, Shengli Tao, Sébastien Villéger, et al.. Human impacts on global freshwater fish biodiversity. Science, 2021, 371 (6531), pp.835-838. https://hal.inrae.fr/hal-03321441v1
2021
Arthur Escalas, Jean-Christophe Auguet, Amandine Avouac, Raphael Seguin, Antoine Gradel, et al.. Ecological Specialization Within a Carnivorous Fish Family Is Supported by a Herbivorous Microbiome Shaped by a Combination of Gut Traits and Specific Diet. Frontiers in Marine Science, 2021, 8, pp.622883. https://hal.umontpellier.fr/hal-03413506v1
2021
V. Parravicini, M. G. Bender, Sébastien Villéger, Fabien Leprieur, L. Pellissier, et al.. Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1961), pp.20211712. https://hal.umontpellier.fr/hal-03475052v1
2021
Mathilde Maslin, Silvain Louis, Karen Godary-Dejean, Lionel Lapierre, Sébastien Villéger, et al.. Underwater robots provide similar fish biodiversity assessments as divers on coral reefs. Remote Sensing in Ecology and Conservation, 2021, 7, pp.567-578. https://hal.science/hal-03261663v1
2021
Virginie Marques, Paul Castagne, Andrea Polanco Fernandez, Giomar Helena Borrero-Perez, Régis Hocdé, et al.. Use of environmental DNA in assessment of fish functional and phylogenetic diversity. Conservation Biology, 2021, https://hal.umontpellier.fr/hal-03451172v1
2020
Sébastien Villon, David Mouillot, Marc Chaumont, Gérard Subsol, Thomas Claverie, et al.. A new method to control error rates in automated species identification with deep learning algorithms. Scientific Reports, 2020, 10 (1), https://hal-lirmm.ccsd.cnrs.fr/lirmm-03002261v1
2020
R. Keller Kopf, Jian D. L. Yen, Dale G. Nimmo, Sébastien Brosse, Sébastien Villéger. Global patterns and predictors of trophic position, body size and jaw size in fishes. Global Ecology and Biogeography, 2020, 30 (2), pp.414--428. https://hal.umontpellier.fr/hal-03413613v1
2020
Marlène Chiarello, J.-C. Auguet, Nicholas Graham, Thomas Claverie, Elliott Sucré, et al.. Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1927), pp.20200642. https://hal.science/hal-03093105v1
2020
Guohuan Su, Sébastien Villéger, Sébastien Brosse. Morphological sorting of introduced freshwater fish species within and between donor realms. Global Ecology and Biogeography, 2020, 29 (5), pp.803-813. https://hal.science/hal-03093245v1
2020
Joshua Cinner, Jessica Zamborain-Mason, Georgina Gurney, Nicholas Graham, M. Aaron Macneil, et al.. Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world. Science, 2020, 368 (6488), pp.307-311. https://hal.science/hal-03090286v1
2020
Alienor Jeliazkov, Darko Mijatovic, Stéphane Chantepie, Nigel Andrew, Raphaël Arlettaz, et al.. A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data , 2020, 7 (1), pp.6. https://univ-lyon1.hal.science/hal-02438887v1
2020
Nina M D Schiettekatte, Diego R Barneche, Sébastien Villéger, Jacob E Allgeier, Deron E Burkepile, et al.. Nutrient limitation, bioenergetics and stoichiometry: A new model to predict elemental fluxes mediated by fishes. Functional Ecology, 2020, 34 (9), pp.1857-1869. https://univ-perp.hal.science/hal-03013820v1
2020
Camille Leclerc, Sébastien Villéger, Clara Marino, Céline Bellard. Global changes threaten functional and taxonomic diversity of insular species worldwide. Diversity and Distributions, 2020, 26 (4), pp.402-414. https://hal.sorbonne-universite.fr/hal-02477847v1
2019
Matthew Mclean, David Mouillot, Sébastien Villéger, Nicholas a J Graham, Arnaud Auber. Interspecific differences in environmental response blur trait dynamics in classic statistical analyses. Marine Biology, 2019, 166 (12), https://hal.science/hal-03099050v1
2019
Anne-Sophie Tribot, Julie Deter, Thomas Claverie, François Guillhaumon, Sébastien Villéger, et al.. Species diversity and composition drive the aesthetic value of coral reef fish assemblages. Biology Letters, 2019, 15 (11), pp.20190703. https://hal.science/hal-03090210v1
2019
Matthew Mclean, Arnaud Auber, Nicholas Graham, Peter Houk, Sebastien Villeger, et al.. Trait structure and redundancy determine sensitivity to disturbance in marine fish communities. Global Change Biology, 2019, 25 (10), pp.3424-3437. https://hal.science/hal-02324196v1
2019
Sébastien Villéger, Eric Fouilland, Jérémy Argenty, Corinne Bouvier, Claire Carré, et al.. Interspecific differences in the effect of fish on marine microbial plankton. Aquatic Microbial Ecology, 2019, 82 (3), pp.289-298. https://hal.science/hal-02105424v1
2019
Anne Chao, Chun-Huo Chiu, Sebastien Villeger, I.-Fang Sun, Simon Thorn, et al.. An attribute-diversity approach to functional diversity, functional beta diversity, and related (dis)similarity measures. Ecological monographs, 2019, 89 (2), pp.UNSP e01343. https://hal.science/hal-02403272v1
2019
Luisa Resende Manna, Sebastien Villeger, Carla Ferreira Rezende, Rosana Mazzoni. High intraspecific variability in morphology and diet in tropical stream fish communities. Ecology of Freshwater Fish, 2019, 28 (1), pp.41-52. https://hal.umontpellier.fr/hal-01994129v1
2019
Guohuan Su, Sebastien Villeger, Sébastien Brosse. Morphological diversity of freshwater fishes differs between realms, but morphologically extreme species are widespread. Global Ecology and Biogeography, 2019, 28 (2), pp.211--221. https://hal.science/hal-02439848v1
2019
T. Zhao, Sébastien Villéger, Julien Cucherousset. Accounting for intraspecific diversity when examining relationships between non-native species and functional diversity. Oecologia, 2019, 189 (1), pp.171-183. https://hal.umontpellier.fr/hal-01993708v1
2019
Matthew Mclean, David Mouillot, Martin Lindegren, Sebastien Villeger, Georg Engelhard, et al.. Fish communities diverge in species but converge in traits over three decades of warming. Global Change Biology, 2019, 25 (11), pp.3972--3984. https://hal.science/hal-02439731v1
2018
Nuria Teixido, Maria Cristina Gambi, Valeriano Parravacini, Kristy Kroeker, Fiorenza Micheli, et al.. Functional biodiversity loss along natural CO2 gradients. Nature Communications, 2018, 9, https://hal.umontpellier.fr/hal-01994135v1
2018
Aurèle Toussaint, Nicolas Charpin, Olivier Beauchard, Gaêl Grenouillet, Thierry Oberdorff, et al.. Non-native species led to marked shifts in functional diversity of the world freshwater fish faunas. Ecology Letters, 2018, 21 (11), pp.1649-1659. https://hal.umontpellier.fr/hal-02002122v1
2018
Anne-Sophie Tribot, Quentin Carabeux, Julie Deter, Thomas Claverie, Sebastien Villeger, et al.. Confronting species aesthetics with ecological functions in coral reef fish. Scientific Reports, 2018, 8 (1), https://cnrs.hal.science/hal-02346580v1
2018
A. Leruste, Sébastien Villéger, N. Malet, R. de Wit, B. Bec. Complementarity of the multidimensional functional and the taxonomic approaches to study phytoplankton communities in three Mediterranean coastal lagoons of different trophic status. Hydrobiologia, 2018, 815 (1), pp.207--227. https://hal.science/hal-01826660v1
2018
Nicole Colin, Sebastien Villeger, Martin Wilkes, Adolfo De Sostoa, Alberto Maceda-Veiga. Functional diversity measures revealed impacts of non-native species and habitat degradation on species-poor freshwater fish assemblages. Science of the Total Environment, 2018, 625, pp.861--871. https://hal.science/hal-01826661v1
2018
Matthew Mclean, David Mouillot, Martin Lindegren, Georg Engelhard, Sebastien Villeger, et al.. A Climate-Driven Functional Inversion of Connected Marine Ecosystems. Current Biology, 2018, 28 (22), pp.3654. https://hal.science/hal-01994182v1
2018
Marlene Chiarello, J.-C. Auguet, Yvan Bettarel, Corinne Bouvier, Thomas Claverie, et al.. Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet. Microbiome, 2018, 6, https://hal.umontpellier.fr/hal-02002252v1
2018
Eva Maire, Sebastien Villeger, Nicholas A. J. Graham, Andrew S. Hoey, Joshua Cinner, et al.. Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific. Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1883), https://hal.umontpellier.fr/hal-02002283v1
2018
Rafael P. Leitao, Jansen Zuanon, David Mouillot, Cecilia G. Leal, Robert M. Hughes, et al.. Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams. Ecography, 2018, 41 (1), pp.219--232. https://hal.science/hal-01826757v1
2018
David Mouillot, Sébastien Villon, Marc Chaumont, Gérard Subsol, Emily Darling, et al.. A Deep learning method for accurate and fast identification of coral reef fishes in underwater images. Ecological Informatics, 2018, 48, pp.238-244. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01884005v1
2018
Matthias Grenié, David Mouillot, Sebastien Villeger, Pierre Denelle, Caroline M. Tucker, et al.. Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation. Biological Conservation, 2018, 226, pp.288-299. https://hal.umontpellier.fr/hal-02002180v1
2017
Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, J.-C. Auguet, Thierry Bouvier. Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals. Scientific Reports, 2017, 7 (1), https://hal.umontpellier.fr/hal-01929494v1
2017
Cagan H. Sekercioglu, Jean-Yves Barnagaud, W. Daniel Kissling, Constantinos Tsirogiannis, Vissarion Fisikopoulos, et al.. Biogeographical, environmental and anthropogenic determinants of global patterns in bird taxonomic and trait turnover. Global Ecology and Biogeography, 2017, 26 (10), pp.1190-1200. https://hal.science/hal-01932915v1
2017
Sébastien Villéger, Sébastien Brosse, Maud Mouchet, David Mouillot, Michael J. Vanni. Functional ecology of fish: current approaches and future challenges. Aquatic Sciences - Research Across Boundaries, 2017, 79 (4), pp.783--801. https://hal.science/hal-01932917v1
2017
Sofia Henriques, François Guilhaumon, Sébastien Villéger, Sandra Amoroso, Susana França, et al.. Biogeographical region and environmental conditions drive functional traits of estuarine fish assemblages worldwide. Fish and Fisheries, 2017, 18 (4), pp.752--771. https://hal.science/hal-01932910v1
2017
Sébastien Villéger, Eva Maire, Fabien Leprieur. On the risks of using dendrograms to measure functional diversity and multidimensional spaces to measure phylogenetic diversity: a comment on Sobral et al . (2016). Ecology Letters, 2017, 20 (4), pp.554--557. https://hal.science/hal-01928114v1
2016
Stephanie d'Agata, Laurent Vigliola, Nicholas Graham, Laurent Wantiez, Valeriano Parravicini, et al.. Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1844), https://hal.umontpellier.fr/hal-01926552v1
2016
Anne-Sophie Tribot, Nicolas Mouquet, Sébastien Villéger, Michel Raymond, Fabrice Hoff, et al.. Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs. Scientific Reports, 2016, 6, https://hal.science/hal-03104012v1
2016
Aurèle Toussaint, Olivier Beauchard, Thierry Oberdorff, Sébastien Brosse, Sébastien Villéger. Worldwide freshwater fish homogenization is driven by a few widespread non-native species. Biological Invasions, 2016, 18 (5), pp.1295 - 1304. https://hal.umontpellier.fr/hal-01926453v1
2016
Aggeliki Doxa, Florian Holon, Julie Deter, Sébastien Villéger, Pierre Boissery, et al.. Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean Sea. Ecological Indicators, 2016, 61 (2), pp.1042--1054. https://hal.science/hal-01444069v1
2016
Rafael P. Leitão, Jansen Zuanon, Sébastien Villéger, Stephen E. Williams, Christopher Baraloto, et al.. Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1828), https://hal.science/hal-01532639v1
2016
Aurèle Toussaint, Nicolas Charpin, Sébastien Brosse, S. Villéger. Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread. Scientific Reports, 2016, 6, pp.22125. https://hal.umontpellier.fr/hal-01926535v1
2016
Thomas Pool, Julien Cucherousset, Stéphanie Boulêtreau, Sébastien Villéger, Angela Strecker, et al.. Increased taxonomic and functional similarity does not increase the trophic similarity of communities. Global Ecology and Biogeography, 2016, 25 (1), pp.46 - 54. https://hal.umontpellier.fr/hal-01923719v1
2015
The Thu Pham, van Thuoc Chu, Thu Viet Ha Bui, Thanh Thuy Nguyen, Quang Huy Tran, et al.. Coral-associated viruses and bacteria in the Ha Long Bay, Vietnam. Aquatic Microbial Ecology, 2015, 76 (2), pp.149 - 161. https://hal.umontpellier.fr/hal-01921797v1
2015
A. Sagouis, J. Cucherousset, S. Villeger, F. Santoul, S. Boulêtreau. Non-native species modify the isotopic structure of freshwater fish communities across the globe. Ecography, 2015, 38 (10), pp.979 - 985. https://hal.umontpellier.fr/hal-01921807v1
2015
Julien Cucherousset, Sébastien Villéger. Quantifying the multiple facets of isotopic diversity: New metrics for stable isotope ecology. Ecological Indicators, 2015, 56, pp.152 - 160. https://hal.umontpellier.fr/hal-01919375v1
2015
Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, Yvan Bettarel, Thierry Bouvier. High diversity of skin-associated bacterial communities of marine fishes is promoted by their high variability among body parts, individuals and species. FEMS Microbiology Ecology, 2015, 91 (7), https://hal.umontpellier.fr/hal-01841505v1
2015
Eva Maire, Gaêl Grenouillet, Sébastien Brosse, Sébastien Villéger. How many dimensions are needed to accurately assess functional diversity? A pragmatic approach for assessing the quality of functional spaces. Global Ecology and Biogeography, 2015, 24 (6), pp.728 - 740. https://hal.umontpellier.fr/hal-01919339v1
2015
Sébastien Villéger, Simon Blanchet, Olivier Beauchard, Thierry Oberdorff, Sébastien Brosse. From current distinctiveness to future homogenization of the world's freshwater fish faunas. Diversity and Distributions, 2015, 21 (2), pp.223 - 235. https://hal.umontpellier.fr/hal-01841305v1
2015
C. Sirot, S. Villéger, D. Mouillot, Audrey M. Darnaude, J. Ramos-Miranda, et al.. Combinations of biological attributes predict temporal dynamics of fish species in response to environmental changes. Ecological Indicators, 2015, 48, pp.147--156. https://hal.umontpellier.fr/hal-01840060v1
84 article(s)
Autres publications
2021
Thomas Claverie, Marc Chaumont, Karen Godary-Dejean, Adrien Hereau, Lionel Lapierre, et al.. Coupling underwater autonomous vehicles and automatic video analysis for efficient monitoring of coral reef ecosystems: promises and challenges. ICRS 2021 - 15th International Coral Reef Symposium, Jul 2021, Bremen (virtual), Germany. https://hal-lirmm.ccsd.cnrs.fr/lirmm-03820865v1
2020
Elyse Boudin, Frédérique Carcaillet, Anne-Sophie Tribot, Quentin Carabeux, Julie Deter, et al.. Coral Reef Fish: Not Just a Matter of Beauty!. 2020, https://hal.science/hal-03003447v1
2018
Sébastien Villon, David Mouillot, Marc Chaumont, Emily Darling, Gérard Subsol, et al.. A deep learning algorithm for automatic identification of coral reef fish species on images. WCMB 2018 - 4th World Conference on Marine Biodiversity, May 2018, Montréal, Canada. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01883997v1
2017
Silvain Louis, Karen Godary-Dejean, Lionel Lapierre, Thomas Claverie, Sébastien Villéger. Formal Method for Mission Controller Generation of a Mobile Robot. TAROS 2017 - 18th Annual Conference Towards Autonomous Robotic Systems, Jul 2017, Guildford, United Kingdom. pp.586-600, https://hal-lirmm.ccsd.cnrs.fr/lirmm-01589007v1
2017
Silvain Louis, Lionel Lapierre, Karen Godary-Dejean, Yadpiroon Onmek, Thomas Claverie, et al.. Quaternion based control for robotic observation of marine diversity. OCEANS, Jun 2017, Aberdeen, United Kingdom. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01588991v1
2016
Sébastien Villon, Marc Chaumont, Gérard Subsol, Sébastien Villéger, Thomas Claverie, et al.. Coral reef fish detection and recognition in underwater videos by supervised machine learning : Comparison between Deep Learning and HOG+SVM methods. ACIVS 2016 - 17th International Conference on Advanced Concepts for Intelligent Vision Systems, Oct 2016, Lecce, Italy. https://hal.science/hal-01374123v1
6 article(s)
2024
Ulysse Flandrin, David Mouillot, Camille Albouy, Sonia Bejarano, Nicolas Casajus, et al.. Fish communities can simultaneously contribute to nature and people across the world's tropical reefs. One Earth, 2024, 7 (10), pp.1772-1785. https://hal.science/hal-04746202v1
2024
Nicolas Loiseau, David Mouillot, Laure Velez, Raphaël Seguin, Nicolas Casajus, et al.. Inferring the extinction risk of marine fish to inform global conservation priorities. PLoS Biology, 2024, 22 (8), pp.e3002773. https://hal.science/hal-04689827v1
2024
Camille Magneville, Capucine Brissaud, Valentine Fleuré, Nicolas Loiseau, Thomas Claverie, et al.. A new framework for estimating abundance of animals using a network of cameras. Limnology and Oceanography: Methods, 2024, 22 (4), pp.268-280. https://hal.science/hal-04731255v1
2024
Camille Magneville, Solène Dedieu, Nicolas Loiseau, Thomas Claverie, Sébastien Villéger. Detecting benefits of protection level on diversity facets in a sea of temporal scarcity. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, https://hal.umontpellier.fr/hal-04431971v1
2024
Julie Deter, Laurent Ballesta, Adèle Barroil, Guilhem Marre, Nadia Faure, et al.. Gigantic breeding colonies of a marine fish in the Mediterranean. Current Biology, 2024, 34 (18), pp.R852-R853. https://hal.umontpellier.fr/hal-04754482v1
2024
Valentine Fleuré, Camille Magneville, David Mouillot, Sébastien Villéger. Automated identification of invasive rabbitfishes in underwater images from the Mediterranean Sea. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, 34 (1), pp.e4073. https://hal.science/hal-04491791v1
2024
Elena Litchman, Sébastien Villéger, Zinger Lucie, Jean-Christophe Auguet, Wilfried Thuiller, et al.. Refocusing the microbial rare biosphere concept through a functional lens. Trends in Ecology & Evolution, 2024, https://hal.umontpellier.fr/hal-04666177v1
2024
Núria Teixidó, Jérémy Carlot, Samir Alliouane, Enric Ballesteros, Cinzia de Vittor, et al.. Functional changes across marine habitats due to ocean\r\nacidification. Global Change Biology, 2024, 30 (1), pp.170105. https://hal.science/hal-04417178v1
2023
Camille Magneville, Thomas Claverie, Sébastien Villéger. Remote video surveys unveil the diurnal variability of trophic-based processes by fishes on coral reefs. Coral Reefs, 2023, 43 (2), pp.253-263. https://hal.science/hal-04645517v1
2023
Sébastien Villéger, Camille Magneville, Fany Roncin, Lise Retailleau, Thomas Claverie. Behavior of reef fishes during a submarine magnitude 5 earthquake. Ecology, 2023, 104 (10), pp.e4148. https://hal.science/hal-04248123v1
2023
Céline Condachou, Tristan Milhau, Jérôme Murienne, Sébastien Brosse, Sébastien Villéger, et al.. Inferring functional diversity from environmental DNA metabarcoding. Environmental DNA, 2023, 5 (5), pp.934-944. https://hal.science/hal-04269097v1
2023
Nina Schiettekatte, Jordan Casey, Simon Brandl, Alexandre Mercière, Sam Degregori, et al.. The role of fish feces for nutrient cycling on coral reefs. Oikos, 2023, https://hal.umontpellier.fr/hal-04163907v1
2023
Marie Gimenez, Sébastien Villéger, Gaêl Grenouillet, Julien Cucherousset. Stocking practices shape the taxonomic and functional diversity of fish communities in gravel pit lakes. Fisheries Management and Ecology, 2023, https://hal.umontpellier.fr/hal-04104169v1
2022
Camille Magneville, Marie‐lou Leréec Le Bricquir, Thanos Dailianis, Grigorios Skouradakis, Thomas Claverie, et al.. Long‐duration remote underwater videos reveal that grazing by fishes is highly variable through time and dominated by non‐indigenous species. Remote Sensing in Ecology and Conservation, 2022, https://hal.umontpellier.fr/hal-03858677v1
2022
Nina M D Schiettekatte, Francesca Conte, Beverly French, Simon J Brandl, Christopher J Fulton, et al.. Combining stereo‐video monitoring and physiological trials to estimate reef fish metabolic demands in the wild. Ecology and Evolution, 2022, 12, https://hal.science/hal-03798478v1
2022
Gonzalo Pérez‐rosales, Michel Pichon, Héloïse Rouzé, Sébastien Villéger, Gergely Torda, et al.. Mesophotic coral ecosystems of French Polynesia are hotspots of alpha and beta generic diversity for scleractinian assemblages. Diversity and Distributions, 2022, 28, pp.1391 - 1403. https://hal.science/hal-03798538v1
2022
Joshua Cinner, Jessica Zamborain-Mason, Eva Maire, Andrew Hoey, Nicholas A.J. Graham, et al.. Linking key human-environment theories to inform the sustainability of coral reefs. Current Biology, 2022, 32 (12), pp.2610-2620. https://hal.science/hal-03798539v1
2022
Marlene Chiarello, Mark Mccauley, Sébastien Villéger, Colin R. Jackson. Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold. PLoS ONE, 2022, 17 (2), pp.e0264443. https://hal.umontpellier.fr/hal-03669633v1
2022
Guohuan Su, Pablo A. Tedesco, Aurele Toussaint, Sébastien Villéger, Sebastien Brosse. Contemporary environment and historical legacy explain functional diversity of freshwater fishes in the world rivers. Global Ecology and Biogeography, 2022, https://hal.umontpellier.fr/hal-03622229v1
2022
Nicolas Loiseau, Sébastien Villéger, Charles Le Bozec, Marie Gimenez, Seiji Léo Kawahara, et al.. Mesophotic reefs are not refugia for neither taxonomic nor functional diversity of reef fishes. Coral Reefs, 2022, https://hal.umontpellier.fr/hal-03860627v1
2022
Arthur Escalas, Amandine Avouac, Jonathan Belmaker, Thierry Bouvier, Valentin Clédassou, et al.. An invasive herbivorous fish (Siganus rivulatus) influences both benthic and planktonic microbes through defecation and nutrient excretion. Science of the Total Environment, 2022, 838 (3), pp.156207. https://hal.science/hal-03798650v1
2022
Arthur Escalas, Jean-Christophe Auguet, Amandine Avouac, Jonathan Belmaker, Thanos Dailianis, et al.. Shift and homogenization of gut microbiome during invasion in marine fishes. Animal Microbiome, 2022, 4 (1), pp.37. https://hal.umontpellier.fr/hal-03691656v1
2022
Nina Schiettekatte, Simon Brandl, Jordan Casey, Nicholas Graham, Diego Barneche, et al.. Biological trade-offs underpin coral reef ecosystem functioning. Nature Ecology & Evolution, 2022, 6, pp.701-708. https://unc.hal.science/hal-03637887v1
2022
Madeline Steinberg, Jean-Baptiste Juhel, Virginie Marques, Clara Péron, Régis Hocdé, et al.. Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 2022, 169 (1), pp.15. https://hal.umontpellier.fr/hal-03566643v1
2022
Camille Magneville, Nicolas Loiseau, Camille Albouy, Nicolas Casajus, Thomas Claverie, et al.. mFD: an R package to compute and illustrate the multiple facets of functional diversity. Ecography, 2022, 2022 (1), https://hal.umontpellier.fr/hal-03566638v1
2021
Sébastien Brosse, Nicolas Charpin, Guohuan Su, Aurèle Toussaint, Guido Herrera-R, et al.. FISHMORPH: A global database on morphological traits of freshwater fishes. Global Ecology and Biogeography, 2021, 30 (12), pp.2330-2336. https://hal.science/hal-03754045v1
2021
Jacob E. Allgeier, Brian C. Weeks, Katrina S. Munsterman, Nina Wale, Seth J. Wenger, et al.. Phylogenetic conservatism drives nutrient dynamics of coral reef fishes. Nature Communications, 2021, 12 (1), pp.5432. https://hal.umontpellier.fr/hal-03451166v1
2021
David Mouillot, Nicolas Loiseau, Matthias Grenié, Adam Algar, Michele Allegra, et al.. The dimensionality and structure of species trait spaces. Ecology Letters, 2021, 24 (9), pp.1988-2009. https://hal.science/hal-03405358v1
2021
Marie-Charlotte Cheutin, Sébastien Villéger, Christina C Hicks, James P W Robinson, Nicholas a J Graham, et al.. Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts. Microorganisms, 2021, 9, https://cnrs.hal.science/hal-03415928v1
2021
Daphna Shapiro Goldberg, Gil Rilov, Sébastien Villéger, Jonathan Belmaker. Predation Cues Lead to Reduced Foraging of Invasive Siganus rivulatus in the Mediterranean. Frontiers in Marine Science, 2021, 8, pp.678848. https://hal.umontpellier.fr/hal-03413533v1
2021
Sébastien Villon, Corina Iovan, Morgan Mangeas, Thomas Claverie, David Mouillot, et al.. Automatic underwater fish species classification with limited data using few-shot learning. Ecological Informatics, 2021, 63, pp.101320. https://hal.umontpellier.fr/hal-03415715v1
2021
Matthew Mclean, Rick Stuart-Smith, Sébastien Villéger, Arnaud Auber, Graham Edgar, et al.. Trait similarity in reef fish faunas across the world’s oceans. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (12), pp.e2012318118. https://hal.science/hal-03435832v1
2021
Guohuan Su, Maxime Logez, Jun Xu, Shengli Tao, Sébastien Villéger, et al.. Human impacts on global freshwater fish biodiversity. Science, 2021, 371 (6531), pp.835-838. https://hal.inrae.fr/hal-03321441v1
2021
Arthur Escalas, Jean-Christophe Auguet, Amandine Avouac, Raphael Seguin, Antoine Gradel, et al.. Ecological Specialization Within a Carnivorous Fish Family Is Supported by a Herbivorous Microbiome Shaped by a Combination of Gut Traits and Specific Diet. Frontiers in Marine Science, 2021, 8, pp.622883. https://hal.umontpellier.fr/hal-03413506v1
2021
V. Parravicini, M. G. Bender, Sébastien Villéger, Fabien Leprieur, L. Pellissier, et al.. Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1961), pp.20211712. https://hal.umontpellier.fr/hal-03475052v1
2021
Mathilde Maslin, Silvain Louis, Karen Godary-Dejean, Lionel Lapierre, Sébastien Villéger, et al.. Underwater robots provide similar fish biodiversity assessments as divers on coral reefs. Remote Sensing in Ecology and Conservation, 2021, 7, pp.567-578. https://hal.science/hal-03261663v1
2021
Virginie Marques, Paul Castagne, Andrea Polanco Fernandez, Giomar Helena Borrero-Perez, Régis Hocdé, et al.. Use of environmental DNA in assessment of fish functional and phylogenetic diversity. Conservation Biology, 2021, https://hal.umontpellier.fr/hal-03451172v1
2020
Sébastien Villon, David Mouillot, Marc Chaumont, Gérard Subsol, Thomas Claverie, et al.. A new method to control error rates in automated species identification with deep learning algorithms. Scientific Reports, 2020, 10 (1), https://hal-lirmm.ccsd.cnrs.fr/lirmm-03002261v1
2020
R. Keller Kopf, Jian D. L. Yen, Dale G. Nimmo, Sébastien Brosse, Sébastien Villéger. Global patterns and predictors of trophic position, body size and jaw size in fishes. Global Ecology and Biogeography, 2020, 30 (2), pp.414--428. https://hal.umontpellier.fr/hal-03413613v1
2020
Marlène Chiarello, J.-C. Auguet, Nicholas Graham, Thomas Claverie, Elliott Sucré, et al.. Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1927), pp.20200642. https://hal.science/hal-03093105v1
2020
Guohuan Su, Sébastien Villéger, Sébastien Brosse. Morphological sorting of introduced freshwater fish species within and between donor realms. Global Ecology and Biogeography, 2020, 29 (5), pp.803-813. https://hal.science/hal-03093245v1
2020
Joshua Cinner, Jessica Zamborain-Mason, Georgina Gurney, Nicholas Graham, M. Aaron Macneil, et al.. Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world. Science, 2020, 368 (6488), pp.307-311. https://hal.science/hal-03090286v1
2020
Alienor Jeliazkov, Darko Mijatovic, Stéphane Chantepie, Nigel Andrew, Raphaël Arlettaz, et al.. A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data , 2020, 7 (1), pp.6. https://univ-lyon1.hal.science/hal-02438887v1
2020
Nina M D Schiettekatte, Diego R Barneche, Sébastien Villéger, Jacob E Allgeier, Deron E Burkepile, et al.. Nutrient limitation, bioenergetics and stoichiometry: A new model to predict elemental fluxes mediated by fishes. Functional Ecology, 2020, 34 (9), pp.1857-1869. https://univ-perp.hal.science/hal-03013820v1
2020
Camille Leclerc, Sébastien Villéger, Clara Marino, Céline Bellard. Global changes threaten functional and taxonomic diversity of insular species worldwide. Diversity and Distributions, 2020, 26 (4), pp.402-414. https://hal.sorbonne-universite.fr/hal-02477847v1
2019
Matthew Mclean, David Mouillot, Sébastien Villéger, Nicholas a J Graham, Arnaud Auber. Interspecific differences in environmental response blur trait dynamics in classic statistical analyses. Marine Biology, 2019, 166 (12), https://hal.science/hal-03099050v1
2019
Anne-Sophie Tribot, Julie Deter, Thomas Claverie, François Guillhaumon, Sébastien Villéger, et al.. Species diversity and composition drive the aesthetic value of coral reef fish assemblages. Biology Letters, 2019, 15 (11), pp.20190703. https://hal.science/hal-03090210v1
2019
Matthew Mclean, Arnaud Auber, Nicholas Graham, Peter Houk, Sebastien Villeger, et al.. Trait structure and redundancy determine sensitivity to disturbance in marine fish communities. Global Change Biology, 2019, 25 (10), pp.3424-3437. https://hal.science/hal-02324196v1
2019
Sébastien Villéger, Eric Fouilland, Jérémy Argenty, Corinne Bouvier, Claire Carré, et al.. Interspecific differences in the effect of fish on marine microbial plankton. Aquatic Microbial Ecology, 2019, 82 (3), pp.289-298. https://hal.science/hal-02105424v1
2019
Anne Chao, Chun-Huo Chiu, Sebastien Villeger, I.-Fang Sun, Simon Thorn, et al.. An attribute-diversity approach to functional diversity, functional beta diversity, and related (dis)similarity measures. Ecological monographs, 2019, 89 (2), pp.UNSP e01343. https://hal.science/hal-02403272v1
2019
Luisa Resende Manna, Sebastien Villeger, Carla Ferreira Rezende, Rosana Mazzoni. High intraspecific variability in morphology and diet in tropical stream fish communities. Ecology of Freshwater Fish, 2019, 28 (1), pp.41-52. https://hal.umontpellier.fr/hal-01994129v1
2019
Guohuan Su, Sebastien Villeger, Sébastien Brosse. Morphological diversity of freshwater fishes differs between realms, but morphologically extreme species are widespread. Global Ecology and Biogeography, 2019, 28 (2), pp.211--221. https://hal.science/hal-02439848v1
2019
T. Zhao, Sébastien Villéger, Julien Cucherousset. Accounting for intraspecific diversity when examining relationships between non-native species and functional diversity. Oecologia, 2019, 189 (1), pp.171-183. https://hal.umontpellier.fr/hal-01993708v1
2019
Matthew Mclean, David Mouillot, Martin Lindegren, Sebastien Villeger, Georg Engelhard, et al.. Fish communities diverge in species but converge in traits over three decades of warming. Global Change Biology, 2019, 25 (11), pp.3972--3984. https://hal.science/hal-02439731v1
2018
Nuria Teixido, Maria Cristina Gambi, Valeriano Parravacini, Kristy Kroeker, Fiorenza Micheli, et al.. Functional biodiversity loss along natural CO2 gradients. Nature Communications, 2018, 9, https://hal.umontpellier.fr/hal-01994135v1
2018
Aurèle Toussaint, Nicolas Charpin, Olivier Beauchard, Gaêl Grenouillet, Thierry Oberdorff, et al.. Non-native species led to marked shifts in functional diversity of the world freshwater fish faunas. Ecology Letters, 2018, 21 (11), pp.1649-1659. https://hal.umontpellier.fr/hal-02002122v1
2018
Anne-Sophie Tribot, Quentin Carabeux, Julie Deter, Thomas Claverie, Sebastien Villeger, et al.. Confronting species aesthetics with ecological functions in coral reef fish. Scientific Reports, 2018, 8 (1), https://cnrs.hal.science/hal-02346580v1
2018
A. Leruste, Sébastien Villéger, N. Malet, R. de Wit, B. Bec. Complementarity of the multidimensional functional and the taxonomic approaches to study phytoplankton communities in three Mediterranean coastal lagoons of different trophic status. Hydrobiologia, 2018, 815 (1), pp.207--227. https://hal.science/hal-01826660v1
2018
Nicole Colin, Sebastien Villeger, Martin Wilkes, Adolfo De Sostoa, Alberto Maceda-Veiga. Functional diversity measures revealed impacts of non-native species and habitat degradation on species-poor freshwater fish assemblages. Science of the Total Environment, 2018, 625, pp.861--871. https://hal.science/hal-01826661v1
2018
Matthew Mclean, David Mouillot, Martin Lindegren, Georg Engelhard, Sebastien Villeger, et al.. A Climate-Driven Functional Inversion of Connected Marine Ecosystems. Current Biology, 2018, 28 (22), pp.3654. https://hal.science/hal-01994182v1
2018
Marlene Chiarello, J.-C. Auguet, Yvan Bettarel, Corinne Bouvier, Thomas Claverie, et al.. Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet. Microbiome, 2018, 6, https://hal.umontpellier.fr/hal-02002252v1
2018
Eva Maire, Sebastien Villeger, Nicholas A. J. Graham, Andrew S. Hoey, Joshua Cinner, et al.. Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific. Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1883), https://hal.umontpellier.fr/hal-02002283v1
2018
Rafael P. Leitao, Jansen Zuanon, David Mouillot, Cecilia G. Leal, Robert M. Hughes, et al.. Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams. Ecography, 2018, 41 (1), pp.219--232. https://hal.science/hal-01826757v1
2018
David Mouillot, Sébastien Villon, Marc Chaumont, Gérard Subsol, Emily Darling, et al.. A Deep learning method for accurate and fast identification of coral reef fishes in underwater images. Ecological Informatics, 2018, 48, pp.238-244. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01884005v1
2018
Matthias Grenié, David Mouillot, Sebastien Villeger, Pierre Denelle, Caroline M. Tucker, et al.. Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation. Biological Conservation, 2018, 226, pp.288-299. https://hal.umontpellier.fr/hal-02002180v1
2017
Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, J.-C. Auguet, Thierry Bouvier. Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals. Scientific Reports, 2017, 7 (1), https://hal.umontpellier.fr/hal-01929494v1
2017
Cagan H. Sekercioglu, Jean-Yves Barnagaud, W. Daniel Kissling, Constantinos Tsirogiannis, Vissarion Fisikopoulos, et al.. Biogeographical, environmental and anthropogenic determinants of global patterns in bird taxonomic and trait turnover. Global Ecology and Biogeography, 2017, 26 (10), pp.1190-1200. https://hal.science/hal-01932915v1
2017
Sébastien Villéger, Sébastien Brosse, Maud Mouchet, David Mouillot, Michael J. Vanni. Functional ecology of fish: current approaches and future challenges. Aquatic Sciences - Research Across Boundaries, 2017, 79 (4), pp.783--801. https://hal.science/hal-01932917v1
2017
Sofia Henriques, François Guilhaumon, Sébastien Villéger, Sandra Amoroso, Susana França, et al.. Biogeographical region and environmental conditions drive functional traits of estuarine fish assemblages worldwide. Fish and Fisheries, 2017, 18 (4), pp.752--771. https://hal.science/hal-01932910v1
2017
Sébastien Villéger, Eva Maire, Fabien Leprieur. On the risks of using dendrograms to measure functional diversity and multidimensional spaces to measure phylogenetic diversity: a comment on Sobral et al . (2016). Ecology Letters, 2017, 20 (4), pp.554--557. https://hal.science/hal-01928114v1
2016
Stephanie d'Agata, Laurent Vigliola, Nicholas Graham, Laurent Wantiez, Valeriano Parravicini, et al.. Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1844), https://hal.umontpellier.fr/hal-01926552v1
2016
Anne-Sophie Tribot, Nicolas Mouquet, Sébastien Villéger, Michel Raymond, Fabrice Hoff, et al.. Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs. Scientific Reports, 2016, 6, https://hal.science/hal-03104012v1
2016
Aurèle Toussaint, Olivier Beauchard, Thierry Oberdorff, Sébastien Brosse, Sébastien Villéger. Worldwide freshwater fish homogenization is driven by a few widespread non-native species. Biological Invasions, 2016, 18 (5), pp.1295 - 1304. https://hal.umontpellier.fr/hal-01926453v1
2016
Aggeliki Doxa, Florian Holon, Julie Deter, Sébastien Villéger, Pierre Boissery, et al.. Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean Sea. Ecological Indicators, 2016, 61 (2), pp.1042--1054. https://hal.science/hal-01444069v1
2016
Rafael P. Leitão, Jansen Zuanon, Sébastien Villéger, Stephen E. Williams, Christopher Baraloto, et al.. Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1828), https://hal.science/hal-01532639v1
2016
Aurèle Toussaint, Nicolas Charpin, Sébastien Brosse, S. Villéger. Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread. Scientific Reports, 2016, 6, pp.22125. https://hal.umontpellier.fr/hal-01926535v1
2016
Thomas Pool, Julien Cucherousset, Stéphanie Boulêtreau, Sébastien Villéger, Angela Strecker, et al.. Increased taxonomic and functional similarity does not increase the trophic similarity of communities. Global Ecology and Biogeography, 2016, 25 (1), pp.46 - 54. https://hal.umontpellier.fr/hal-01923719v1
2015
The Thu Pham, van Thuoc Chu, Thu Viet Ha Bui, Thanh Thuy Nguyen, Quang Huy Tran, et al.. Coral-associated viruses and bacteria in the Ha Long Bay, Vietnam. Aquatic Microbial Ecology, 2015, 76 (2), pp.149 - 161. https://hal.umontpellier.fr/hal-01921797v1
2015
A. Sagouis, J. Cucherousset, S. Villeger, F. Santoul, S. Boulêtreau. Non-native species modify the isotopic structure of freshwater fish communities across the globe. Ecography, 2015, 38 (10), pp.979 - 985. https://hal.umontpellier.fr/hal-01921807v1
2015
Julien Cucherousset, Sébastien Villéger. Quantifying the multiple facets of isotopic diversity: New metrics for stable isotope ecology. Ecological Indicators, 2015, 56, pp.152 - 160. https://hal.umontpellier.fr/hal-01919375v1
2015
Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, Yvan Bettarel, Thierry Bouvier. High diversity of skin-associated bacterial communities of marine fishes is promoted by their high variability among body parts, individuals and species. FEMS Microbiology Ecology, 2015, 91 (7), https://hal.umontpellier.fr/hal-01841505v1
2015
Eva Maire, Gaêl Grenouillet, Sébastien Brosse, Sébastien Villéger. How many dimensions are needed to accurately assess functional diversity? A pragmatic approach for assessing the quality of functional spaces. Global Ecology and Biogeography, 2015, 24 (6), pp.728 - 740. https://hal.umontpellier.fr/hal-01919339v1
2015
Sébastien Villéger, Simon Blanchet, Olivier Beauchard, Thierry Oberdorff, Sébastien Brosse. From current distinctiveness to future homogenization of the world's freshwater fish faunas. Diversity and Distributions, 2015, 21 (2), pp.223 - 235. https://hal.umontpellier.fr/hal-01841305v1
2015
C. Sirot, S. Villéger, D. Mouillot, Audrey M. Darnaude, J. Ramos-Miranda, et al.. Combinations of biological attributes predict temporal dynamics of fish species in response to environmental changes. Ecological Indicators, 2015, 48, pp.147--156. https://hal.umontpellier.fr/hal-01840060v1
84 article(s)
Autres publications
2021
Thomas Claverie, Marc Chaumont, Karen Godary-Dejean, Adrien Hereau, Lionel Lapierre, et al.. Coupling underwater autonomous vehicles and automatic video analysis for efficient monitoring of coral reef ecosystems: promises and challenges. ICRS 2021 - 15th International Coral Reef Symposium, Jul 2021, Bremen (virtual), Germany. https://hal-lirmm.ccsd.cnrs.fr/lirmm-03820865v1
2020
Elyse Boudin, Frédérique Carcaillet, Anne-Sophie Tribot, Quentin Carabeux, Julie Deter, et al.. Coral Reef Fish: Not Just a Matter of Beauty!. 2020, https://hal.science/hal-03003447v1
2018
Sébastien Villon, David Mouillot, Marc Chaumont, Emily Darling, Gérard Subsol, et al.. A deep learning algorithm for automatic identification of coral reef fish species on images. WCMB 2018 - 4th World Conference on Marine Biodiversity, May 2018, Montréal, Canada. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01883997v1
2017
Silvain Louis, Karen Godary-Dejean, Lionel Lapierre, Thomas Claverie, Sébastien Villéger. Formal Method for Mission Controller Generation of a Mobile Robot. TAROS 2017 - 18th Annual Conference Towards Autonomous Robotic Systems, Jul 2017, Guildford, United Kingdom. pp.586-600, https://hal-lirmm.ccsd.cnrs.fr/lirmm-01589007v1
2017
Silvain Louis, Lionel Lapierre, Karen Godary-Dejean, Yadpiroon Onmek, Thomas Claverie, et al.. Quaternion based control for robotic observation of marine diversity. OCEANS, Jun 2017, Aberdeen, United Kingdom. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01588991v1
2016
Sébastien Villon, Marc Chaumont, Gérard Subsol, Sébastien Villéger, Thomas Claverie, et al.. Coral reef fish detection and recognition in underwater videos by supervised machine learning : Comparison between Deep Learning and HOG+SVM methods. ACIVS 2016 - 17th International Conference on Advanced Concepts for Intelligent Vision Systems, Oct 2016, Lecce, Italy. https://hal.science/hal-01374123v1
6 article(s)