Articles dans une revue
2025
Franck Pichot, David Mouillot, Jean-Baptiste Juhel, Alicia Dalongeville, Olivier Adam, et al.. Mediterranean islands as refugia for elasmobranch and threatened fishes. Diversity and Distributions, 2025, 31 (2), pp.e13937. https://hal.umontpellier.fr/hal-04824360v1
2024
Tom B. Letessier, David Mouillot, Laura Mannocci, Hanna Jabour Christ, Elamin Mohammed Elamin, et al.. Divergent responses of pelagic and benthic fish body-size structure to remoteness and protection from humans. Science, 2024, 383 (6686), pp.976--982. https://hal.umontpellier.fr/hal-04531680v1
2024
Mélissa Jaquier, Camille Albouy, Wilhelmine Bach, Conor Waldock, Virginie Marques, et al.. Environmental DNA recovers fish composition turnover of the coral reefs of West Indian Ocean islands. Ecology and Evolution, 2024, 14 (5), pp.e11337. https://hal.umontpellier.fr/hal-04666178v1
2023
Laetitia Mathon, Virginie Marques, Stéphanie Manel, Camille Albouy, Marco Andrello, et al.. The distribution of coastal fish eDNA sequences in the Anthropocene. Global Ecology and Biogeography, 2023, https://hal.umontpellier.fr/hal-04146566v1
2023
Marion Muff, Mélissa Jaquier, Virginie Marques, Laurent Ballesta, Julie Deter, et al.. Environmental DNA highlights fish biodiversity in mesophotic ecosystems. Environmental DNA, 2023, 5 (1), pp.56-72. https://hal.science/hal-04118681v1
2022
Jean‐baptiste Juhel, Virginie Marques, Rizkie Satriya Utama, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Estimating the extended and hidden species diversity from environmental DNA in hyper‐diverse regions. Ecography, 2022, 2022 (10), pp.e06299. https://hal.umontpellier.fr/hal-03823160v1
2022
Loïc Sanchez, Emilie Boulanger, Véronique Arnal, Pierre Boissery, Alicia Dalongeville, et al.. Ecological indicators based on quantitative eDNA metabarcoding: the case of marine reserves. Ecological Indicators, 2022, 140, pp.108966. https://hal.science/hal-03993372v1
2022
Laëtitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1973), pp.20220162. https://hal.umontpellier.fr/hal-03669624v1
2022
Madeline Steinberg, Jean-Baptiste Juhel, Virginie Marques, Clara Péron, Régis Hocdé, et al.. Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 2022, 169 (1), pp.15. https://hal.umontpellier.fr/hal-03566643v1
2021
Andrea Polanco Fernández, Maria Mutis Martinezguerra, Virginie Marques, Francisco Villa‐navarro, Giomar Helena Borrero Pérez, et al.. Detecting aquatic and terrestrial biodiversity in a tropical estuary using environmental DNA. Biotropica, 2021, 53 (6), pp.1606-1619. https://hal.science/hal-04203573v1
2021
Emilie Boulanger, Nicolas Loiseau, Alice Valentini, Véronique Arnal, Pierre Boissery, et al.. Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1949), pp.20210112. https://univ-perp.hal.science/hal-04015973v1
2021
Jean-Baptiste Juhel, Virginie Marques, Andrea Polanco Fernandez, Giomar H. Borrero-Perez, Maria Mutis Martinezguerra, et al.. Detection of the elusive Dwarf sperm whale (Kogia sima) using environmental DNA at Malpelo island (Eastern Pacific, Colombia). Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03413614v1
2021
Andrea Polanco Fernández, Virginie Marques, Fabian Fopp, Jean-Baptiste Juhel, Giomar Helena Borrero-Pérez, et al.. Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes. Environmental DNA, 2021, The future of biodiversity monitoring and conservation utilizing environmental DNA, 3 (1), pp.142-156. https://hal.inrae.fr/hal-03810224v1
2021
Salomé Stauffer, Meret Jucker, Thomas Keggin, Virginie Marques, Marco Andrello, et al.. How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?. Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03415700v1
2021
David Mouillot, Jean-Baptiste Juhel, Virginie Marques, Tristan Milhau, Camille Albouy, et al.. GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding. Diversity and Distributions, 2021, Environmental DNA‐based biodiversity assessment and conservation management in the Anthropocene, 27 (10), pp.1880-1892. https://hal.umontpellier.fr/hal-03415605v1
2021
Virginie Marques, Paul Castagne, Andrea Polanco Fernandez, Giomar Helena Borrero-Perez, Régis Hocdé, et al.. Use of environmental DNA in assessment of fish functional and phylogenetic diversity. Conservation Biology, 2021, https://hal.umontpellier.fr/hal-03451172v1
2020
Jean-Baptiste Juhel, Rizkie Satriya Utama, Virginie Marquès, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1930), pp.20200248. https://hal.science/hal-02900375v1
2019
Jean-Baptiste Juhel, Eva Maire, Elliott Sucre, Marie-Charlotte Cheutin, Virginie Marquès, et al.. From the cradle to the grave: Green turtle hatchlings (Chelonia mydas) preyed upon by two-spots red snappers (Lutjanus bohar). Food Webs, 2019, 21, pp.e00129. https://hal.umontpellier.fr/hal-02413819v1
2019
Tom Letessier, David Mouillot, Phil Bouchet, Laurent Vigliola, Marjorie Fernandes, et al.. Remote reefs and seamounts are the last refuges for marine predators across the Indo-Pacific. PLoS Biology, 2019, 17 (8), pp.e3000366. https://hal.umontpellier.fr/hal-02413901v1
2019
Jean-Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B Letessier, Jessica J Meeuwig, et al.. Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior. Scientific Reports, 2019, 9, pp.2897. https://hal.umontpellier.fr/hal-02413866v1
2018
Germain Boussarie, Judith Bakker, Owen S. Wangensteen, Stefano Mariani, Lucas Bonnin, et al.. Environmental DNA illuminates the dark diversity of sharks. Science Advances , 2018, 4 (5), pp.1-8. https://hal.science/hal-01826693v1
2018
Jean-Baptiste Juhel, Laurent Vigliola, David Mouillot, Michel Kulbicki, Tom B. Letessier, et al.. Reef accessibility impairs the protection of sharks. Journal of Applied Ecology, 2018, 55 (2), pp.673--683. https://hal.science/hal-01826718v1
2015
Tom Letessier, Jean-Baptiste Juhel, Laurent Vigliola, Jessica Meeuwig. Low-cost small action cameras in stereo generates accurate underwater measurements of fish. Journal of Experimental Marine Biology and Ecology, 2015, 466, pp.120 - 126. https://hal.umontpellier.fr/hal-01841498v1
23 article(s)
Autres publications
2021
Laetitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Circumglobal distribution of fish environmental DNA in coral reefs. ARPHA Conference, ARPHA Conference Abstracts, 4, e64792 [3 p.], 2021, https://hal.science/hal-03414805v1
2017
Régis Hocdé, Indra Bayu Vimono, Amir M Suruwaki, Yosephine Tuti, Rizkie Satriya Utama, et al.. Mission report: LENGGURU 2017 Expedition ‘Biodiversity assessment in reef twilight zone and cloud forests’, R/V AIRAHA 2, 1st October 2017 – 30th November 2017, Kaimana Regency, West Papua, Indonesia. [Research Report] Institut de Recherche pour le Développement (IRD), France; Pusat Penelitian Oseanografi, Lembaga Ilmu Pengetahuan (LIPI-P2O), Indonesia; Politeknik Kelautan Dan Perikanan Sorong (Politeknik-KP-Sorong), Papua Barat, Indonesia. 2020. https://hal.science/hal-02565651v1
2 article(s)
2025
Franck Pichot, David Mouillot, Jean-Baptiste Juhel, Alicia Dalongeville, Olivier Adam, et al.. Mediterranean islands as refugia for elasmobranch and threatened fishes. Diversity and Distributions, 2025, 31 (2), pp.e13937. https://hal.umontpellier.fr/hal-04824360v1
2024
Tom B. Letessier, David Mouillot, Laura Mannocci, Hanna Jabour Christ, Elamin Mohammed Elamin, et al.. Divergent responses of pelagic and benthic fish body-size structure to remoteness and protection from humans. Science, 2024, 383 (6686), pp.976--982. https://hal.umontpellier.fr/hal-04531680v1
2024
Mélissa Jaquier, Camille Albouy, Wilhelmine Bach, Conor Waldock, Virginie Marques, et al.. Environmental DNA recovers fish composition turnover of the coral reefs of West Indian Ocean islands. Ecology and Evolution, 2024, 14 (5), pp.e11337. https://hal.umontpellier.fr/hal-04666178v1
2023
Laetitia Mathon, Virginie Marques, Stéphanie Manel, Camille Albouy, Marco Andrello, et al.. The distribution of coastal fish eDNA sequences in the Anthropocene. Global Ecology and Biogeography, 2023, https://hal.umontpellier.fr/hal-04146566v1
2023
Marion Muff, Mélissa Jaquier, Virginie Marques, Laurent Ballesta, Julie Deter, et al.. Environmental DNA highlights fish biodiversity in mesophotic ecosystems. Environmental DNA, 2023, 5 (1), pp.56-72. https://hal.science/hal-04118681v1
2022
Jean‐baptiste Juhel, Virginie Marques, Rizkie Satriya Utama, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Estimating the extended and hidden species diversity from environmental DNA in hyper‐diverse regions. Ecography, 2022, 2022 (10), pp.e06299. https://hal.umontpellier.fr/hal-03823160v1
2022
Loïc Sanchez, Emilie Boulanger, Véronique Arnal, Pierre Boissery, Alicia Dalongeville, et al.. Ecological indicators based on quantitative eDNA metabarcoding: the case of marine reserves. Ecological Indicators, 2022, 140, pp.108966. https://hal.science/hal-03993372v1
2022
Laëtitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1973), pp.20220162. https://hal.umontpellier.fr/hal-03669624v1
2022
Madeline Steinberg, Jean-Baptiste Juhel, Virginie Marques, Clara Péron, Régis Hocdé, et al.. Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 2022, 169 (1), pp.15. https://hal.umontpellier.fr/hal-03566643v1
2021
Andrea Polanco Fernández, Maria Mutis Martinezguerra, Virginie Marques, Francisco Villa‐navarro, Giomar Helena Borrero Pérez, et al.. Detecting aquatic and terrestrial biodiversity in a tropical estuary using environmental DNA. Biotropica, 2021, 53 (6), pp.1606-1619. https://hal.science/hal-04203573v1
2021
Emilie Boulanger, Nicolas Loiseau, Alice Valentini, Véronique Arnal, Pierre Boissery, et al.. Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1949), pp.20210112. https://univ-perp.hal.science/hal-04015973v1
2021
Jean-Baptiste Juhel, Virginie Marques, Andrea Polanco Fernandez, Giomar H. Borrero-Perez, Maria Mutis Martinezguerra, et al.. Detection of the elusive Dwarf sperm whale (Kogia sima) using environmental DNA at Malpelo island (Eastern Pacific, Colombia). Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03413614v1
2021
Andrea Polanco Fernández, Virginie Marques, Fabian Fopp, Jean-Baptiste Juhel, Giomar Helena Borrero-Pérez, et al.. Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes. Environmental DNA, 2021, The future of biodiversity monitoring and conservation utilizing environmental DNA, 3 (1), pp.142-156. https://hal.inrae.fr/hal-03810224v1
2021
Salomé Stauffer, Meret Jucker, Thomas Keggin, Virginie Marques, Marco Andrello, et al.. How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?. Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03415700v1
2021
David Mouillot, Jean-Baptiste Juhel, Virginie Marques, Tristan Milhau, Camille Albouy, et al.. GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding. Diversity and Distributions, 2021, Environmental DNA‐based biodiversity assessment and conservation management in the Anthropocene, 27 (10), pp.1880-1892. https://hal.umontpellier.fr/hal-03415605v1
2021
Virginie Marques, Paul Castagne, Andrea Polanco Fernandez, Giomar Helena Borrero-Perez, Régis Hocdé, et al.. Use of environmental DNA in assessment of fish functional and phylogenetic diversity. Conservation Biology, 2021, https://hal.umontpellier.fr/hal-03451172v1
2020
Jean-Baptiste Juhel, Rizkie Satriya Utama, Virginie Marquès, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1930), pp.20200248. https://hal.science/hal-02900375v1
2019
Jean-Baptiste Juhel, Eva Maire, Elliott Sucre, Marie-Charlotte Cheutin, Virginie Marquès, et al.. From the cradle to the grave: Green turtle hatchlings (Chelonia mydas) preyed upon by two-spots red snappers (Lutjanus bohar). Food Webs, 2019, 21, pp.e00129. https://hal.umontpellier.fr/hal-02413819v1
2019
Tom Letessier, David Mouillot, Phil Bouchet, Laurent Vigliola, Marjorie Fernandes, et al.. Remote reefs and seamounts are the last refuges for marine predators across the Indo-Pacific. PLoS Biology, 2019, 17 (8), pp.e3000366. https://hal.umontpellier.fr/hal-02413901v1
2019
Jean-Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B Letessier, Jessica J Meeuwig, et al.. Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior. Scientific Reports, 2019, 9, pp.2897. https://hal.umontpellier.fr/hal-02413866v1
2018
Germain Boussarie, Judith Bakker, Owen S. Wangensteen, Stefano Mariani, Lucas Bonnin, et al.. Environmental DNA illuminates the dark diversity of sharks. Science Advances , 2018, 4 (5), pp.1-8. https://hal.science/hal-01826693v1
2018
Jean-Baptiste Juhel, Laurent Vigliola, David Mouillot, Michel Kulbicki, Tom B. Letessier, et al.. Reef accessibility impairs the protection of sharks. Journal of Applied Ecology, 2018, 55 (2), pp.673--683. https://hal.science/hal-01826718v1
2015
Tom Letessier, Jean-Baptiste Juhel, Laurent Vigliola, Jessica Meeuwig. Low-cost small action cameras in stereo generates accurate underwater measurements of fish. Journal of Experimental Marine Biology and Ecology, 2015, 466, pp.120 - 126. https://hal.umontpellier.fr/hal-01841498v1
23 article(s)
Autres publications
2021
Laetitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Circumglobal distribution of fish environmental DNA in coral reefs. ARPHA Conference, ARPHA Conference Abstracts, 4, e64792 [3 p.], 2021, https://hal.science/hal-03414805v1
2017
Régis Hocdé, Indra Bayu Vimono, Amir M Suruwaki, Yosephine Tuti, Rizkie Satriya Utama, et al.. Mission report: LENGGURU 2017 Expedition ‘Biodiversity assessment in reef twilight zone and cloud forests’, R/V AIRAHA 2, 1st October 2017 – 30th November 2017, Kaimana Regency, West Papua, Indonesia. [Research Report] Institut de Recherche pour le Développement (IRD), France; Pusat Penelitian Oseanografi, Lembaga Ilmu Pengetahuan (LIPI-P2O), Indonesia; Politeknik Kelautan Dan Perikanan Sorong (Politeknik-KP-Sorong), Papua Barat, Indonesia. 2020. https://hal.science/hal-02565651v1
2 article(s)