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David Mouillot
Articles dans une revue
Joshua G Smith, Cori Lopazanski, Christopher M Free, Julien Brun, Clarissa Anderson, et al.. Conservation benefits of a large marine protected area network that spans multiple ecosystems. Conservation Biology, In press, https://hal.science/hal-04916457v1
2024
Letizia Lamperti, Olivier François, David Mouillot, Laëtitia Mathon, Théophile Sanchez, et al.. A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: an application to fish eDNA surveys. Methods in Ecology and Evolution, 2024, 15 (12), pp.2301-2315. https://hal.science/hal-04917927v1
2024
Conor Waldock, Eva Maire, Camille Albouy, Vania Andreoli, Maria Beger, et al.. Micronutrient levels of global tropical reef fish communities differ from fisheries capture. People and Nature, 2024, 7 (1), pp.32-51. https://ird.hal.science/ird-04933786v1
2024
Ulysse Flandrin, David Mouillot, Camille Albouy, Sonia Bejarano, Nicolas Casajus, et al.. Fish communities can simultaneously contribute to nature and people across the world's tropical reefs. One Earth, 2024, 7 (10), pp.1772-1785. https://hal.science/hal-04746202v1
2024
David Mouillot, Laure Velez, Camille Albouy, Nicolas Casajus, Joachim Claudet, et al.. The socioeconomic and environmental niche of protected areas reveals global conservation gaps and opportunities. Nature Communications, 2024, 15 (1), pp.9007. https://hal.science/hal-04746119v1
2024
Romane Rozanski, Laure Velez, Régis Hocdé, Agnès Duhamet, Conor Waldock, et al.. Seasonal dynamics of Mediterranean fish communities revealed by eDNA: Contrasting compositions across depths and Marine Fully Protected Area boundaries. Ecological Indicators, 2024, 166, pp.112290. https://hal.science/hal-04645476v1
2024
A. Ben Abbes, Jeaneth Machicao, Pedro L.P. Corrêa, Alison Specht, Rodolphe Devillers, et al.. DeepWealth: A generalizable open-source deep learning framework using satellite images for well-being estimation. SoftwareX, 2024, 27, pp.101785. https://hal.science/hal-04645479v1
2024
Nicolas Loiseau, David Mouillot, Laure Velez, Raphaël Seguin, Nicolas Casajus, et al.. Inferring the extinction risk of marine fish to inform global conservation priorities. PLoS Biology, 2024, 22 (8), pp.e3002773. https://hal.science/hal-04689827v1
2024
Laura Mannocci, Solène Derville, Raphael Seguin, David Mouillot. Aerial Video Surveys and Spatial Prioritization Reveal Conservation Opportunities for Endangered Dugongs in New Caledonia. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, 34 (8), https://hal.science/hal-04689829v1
2024
Aurore Receveur, Fabien Leprieur, Kari Ellingsen, David Keith, Kristin Kleisner, et al.. Long‐term changes in taxonomic and functional composition of European marine fish communities. Ecography, 2024, 2024 (9), pp.e07234. https://hal.umontpellier.fr/hal-04664052v1
2024
Nicolas Mouquet, Juliette Langlois, Nicolas Casajus, Arnaud Auber, Ulysse Flandrin, et al.. Low human interest for the most at-risk reef fishes worldwide. Science Advances , 2024, 10 (29), https://hal.umontpellier.fr/hal-04664116v1
2024
Loïc Sanchez, Nicolas Loiseau, Graham J Edgar, Cyril Hautecoeur, Fabien Leprieur, et al.. Rarity mediates species‐specific responses of tropical reef fishes to protection. Ecology Letters, 2024, 27 (3), https://hal.science/hal-04727433v1
2024
Jeneen Hadj-Hammou, Joshua E. Cinner, Diego R. Barneche, Iain R. Caldwell, David Mouillot, et al.. Global patterns and drivers of fish reproductive potential on coral reefs. Nature Communications, 2024, 15 (1), pp.6105. https://hal.umontpellier.fr/hal-04824348v1
2024
Cyprien Alexandre, Rodolphe Devillers, David Mouillot, Raphael Seguin, Thibault Catry. Ship Detection With SAR C-Band Satellite Images: A Systematic Review. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 2024, 17, pp.14353 - 14367. https://ird.hal.science/ird-04749322v1
2024
Tom B. Letessier, David Mouillot, Laura Mannocci, Hanna Jabour Christ, Elamin Mohammed Elamin, et al.. Divergent responses of pelagic and benthic fish body-size structure to remoteness and protection from humans. Science, 2024, 383 (6686), pp.976--982. https://hal.umontpellier.fr/hal-04531680v1
2024
Thomas Bockel, Noémie Bossut, Nicolas Mouquet, David Mouillot, Quentin Fontaine, et al.. Quantifying the impact of small boats on Posidonia seagrass meadows: Methods and path for future efficient management of anchoring pressure. Ocean and Coastal Management, 2024, 259, https://hal.umontpellier.fr/hal-04935438v1
2024
Stéphanie Manel, Laetitia Mathon, David Mouillot, Morgane Bruno, Alice Valentini, et al.. Benchmarking fish biodiversity of seaports with eDNA and nearby marine reserves. Conservation Letters, 2024, n/a, pp.e13001. https://hal.umontpellier.fr/hal-04492229v1
2024
Gaël Mariani, Fabien Moullec, Trisha B Atwood, Beverley Clarkson, Richard T Conant, et al.. Co-benefits of and trade-offs between natural climate solutions and Sustainable Development Goals. Frontiers in Ecology and the Environment, 2024, e2807 [10 p.]. https://hal.umontpellier.fr/hal-04824355v1
2024
Raphael Seguin, Vincent Delbar, Filipe Batista E Silva, David Mouillot. Protected areas shape the distribution of tourism across rural Europe. PEOPLE AND NATURE, 2024, 6 (6), pp.2246--2260. https://hal.umontpellier.fr/hal-04935540v1
Gaël Mariani, Fabien Moullec, Trisha B Atwood, Beverley Clarkson, Richard T Conant, et al.. Co-benefits and trade-offs between Natural Climate Solutions and Sustainable Development Goals. Frontiers in Ecology and the Environment, In press. https://hal.science/hal-04756965v1
2024
Mélissa Jaquier, Camille Albouy, Wilhelmine Bach, Conor Waldock, Virginie Marques, et al.. Environmental DNA recovers fish composition turnover of the coral reefs of West Indian Ocean islands. Ecology and Evolution, 2024, 14 (5), pp.e11337. https://hal.umontpellier.fr/hal-04666178v1
2024
Laetitia Mathon, Florian Baletaud, Anne Lebourges-Dhaussy, Gaël Lecellier, Christophe Menkes, et al.. Three‐dimensional conservation planning of fish biodiversity metrics to achieve the deep‐sea 30×30 conservation target. Conservation Biology, 2024, sous presse/early view. https://hal.science/hal-04693805v1
2024
Julie Deter, Laurent Ballesta, Adèle Barroil, Guilhem Marre, Nadia Faure, et al.. Gigantic breeding colonies of a marine fish in the Mediterranean. Current Biology, 2024, 34 (18), pp.R852-R853. https://hal.umontpellier.fr/hal-04754482v1
2024
Franck Pichot, David Mouillot, Jean-Baptiste Juhel, Alicia Dalongeville, Olivier Adam, et al.. Mediterranean Islands as Refugia for Elasmobranch and Threatened Fishes. Diversity and Distributions, 2024, pp.e13937. https://hal.umontpellier.fr/hal-04824360v1
2024
Iain R. Caldwell, Tim R. Mcclanahan, Remy M. Oddenyo, Nicholas A. J. Graham, Maria Beger, et al.. Protection efforts have resulted in ∼ 10% of existing fish biomass on coral reefs. Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (42), https://hal.umontpellier.fr/hal-04935440v1
2024
Valentine Fleuré, Camille Magneville, David Mouillot, Sébastien Villéger. Automated identification of invasive rabbitfishes in underwater images from the Mediterranean Sea. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, 34 (1), pp.e4073. https://hal.science/hal-04491791v1
2024
Paula A. Ruiz-Ruiz, Jose A. Sanabria-Fernandez, Jasmin M. Schuster, Joanna K. Schmid, Susan C. Baker, et al.. Overcome imposter syndrome: Contribute to working groups and build strong networks. Biological Conservation, 2024, 293, pp.110566. https://hal.umontpellier.fr/hal-04645431v1
2024
Thomas Bockel, Guilhem Marre, Gwenaëlle Delaruelle, Noémie Agel, Pierre Boissery, et al.. Early signals of Posidonia oceanica meadows recovery in a context of wastewater treatment improvements. Marine Pollution Bulletin, 2024, 201, pp.116193. https://hal.umontpellier.fr/hal-04492231v1
2024
Eva Maire, James P. W. Robinson, Matthew Mclean, Suchinta Arif, Jessica Zamborain-Mason, et al.. Managing nutrition-biodiversity trade-offs on coral reefs. Current Biology, 2024, https://hal.umontpellier.fr/hal-04727758v1
2024
Simon J. Brandl, Jeremy Carlot, Rick D. Stuart-Smith, Sally A. Keith, Nicholas A. J. Graham, et al.. Unifying Coral Reef States Through Space and Time Reveals a Changing Ecosystem. Global Ecology and Biogeography, 2024, 33 (12), pp.e13926. https://hal.umontpellier.fr/hal-04824351v1
2024
Sébastien Desbureaux, Julia Girard, Alicia Dalongeville, Rodolphe Devillers, David Mouillot, et al.. The long‐term impacts of Marine Protected Areas on fish catch and socioeconomic development in Tanzania. Conservation Letters, 2024, 17 (6), pp.e13048. https://hal.inrae.fr/hal-04724396v1
2024
Camille Mellin, Stuart Brown, Neal Cantin, Eduardo Klein-Salas, David Mouillot, et al.. Cumulative risk of future bleaching for the world’s coral reefs. Science Advances, 2024, 10 (26), pp.eadn9660. https://hal.umontpellier.fr/hal-04727761v1
2024
Bastien Macé, David Mouillot, Alicia Dalongeville, Morgane Bruno, Julie Deter, et al.. The Tree of Life eDNA metabarcoding reveals a similar taxonomic richness but dissimilar evolutionary lineages between seaports and marine reserves. Molecular Ecology, 2024, 33 (12), pp.e17373. https://hal.science/hal-04645519v1
2023
Letizia Lamperti, Théophile Sanchez, Sara Si Moussi, David Mouillot, Camille Albouy, et al.. New deep learning-based methods for visualizing ecosystem properties using environmental DNA metabarcoding data. Molecular Ecology Resources, 2023, 23 (8), pp.1946-1958. https://hal.umontpellier.fr/hal-04313526v1
2023
Céline Condachou, Tristan Milhau, Jérôme Murienne, Sébastien Brosse, Sébastien Villéger, et al.. Inferring functional diversity from environmental DNA metabarcoding. Environmental DNA, 2023, 5 (5), pp.934-944. https://hal.science/hal-04269097v1
2023
Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, Trisha B. Atwood, et al.. Reply to: Global effects of marine protected areas on food security are unknown. Nature, 2023, 621 (7979), pp.E34-U24. https://hal.science/hal-04384154v1
2023
Christopher Free, Joshua Smith, Julien Brun, Tessa Francis, Jacob Eurich, et al.. If you build it, they will come: coastal amenities facilitate human engagement in marine protected areas. People and Nature, 2023, https://hal.science/hal-04178594v1
2023
François Munoz, Christopher A Klausmeier, Pierre Gaüzère, Gaurav Kandlikar, Elena Litchman, et al.. The ecological causes of functional distinctiveness in communities. Ecology Letters, 2023, 26 (8), pp.1452-1465. https://hal.inrae.fr/hal-04137129v1
2023
Trisha B. Atwood, Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, et al.. Reply to: Quantifying the carbon benefits of ending bottom trawling. Nature, 2023, 617 (7960), pp.E3-E5. https://hal.science/hal-04204054v1
2023
Laetitia Mathon, Virginie Marques, Stéphanie Manel, Camille Albouy, Marco Andrello, et al.. The distribution of coastal fish eDNA sequences in the Anthropocene. Global Ecology and Biogeography, 2023, https://hal.umontpellier.fr/hal-04146566v1
2023
Mattia Ghilardi, Michael A Salter, Valeriano Parravicini, Sebastian C A Ferse, Tim Rixen, et al.. Temperature, species identity and morphological traits predict carbonate excretion and mineralogy in tropical reef fishes. Nature Communications, 2023, 14 (1), pp.985. https://univ-perp.hal.science/hal-04152551v1
2023
Mickael Heudier, David Mouillot, Laura Mannocci. Assessing the effects of coral reef habitat and marine protected areas on threatened megafauna using aerial surveys. Aquatic Conservation: Marine and Freshwater Ecosystems, 2023, https://hal.umontpellier.fr/hal-03994893v1
2023
Raphael Seguin, David Mouillot, Joshua Cinner, Rick Stuart Smith, Eva Maire, et al.. Towards process-oriented management of tropical reefs in the anthropocene. Nature Sustainability, 2023, 6 (2), pp.148-157. https://hal.umontpellier.fr/hal-03858373v1
2023
Agnès Duhamet, Camille Albouy, Virginie Marques, Stéphanie Manel, David Mouillot. The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding. Ecology and Evolution, 2023, 13 (1), pp.e9672. https://hal.umontpellier.fr/hal-04032735v1
2023
Catalina Pimiento, Camille Albouy, Daniele Silvestro, Théophile L. Mouton, Laure Velez, et al.. Functional diversity of sharks and rays is highly vulnerable and supported by unique species and locations worldwide. Nature Communications, 2023, 14 (1), pp.7691. https://hal.umontpellier.fr/hal-04492197v1
2023
Nadia Faure, Stéphanie Manel, Bastien Macé, Véronique Arnal, Nacim Guellati, et al.. An environmental DNA assay for the detection of Critically Endangered angel sharks (Squatina spp.). Aquatic Conservation: Marine and Freshwater Ecosystems, 2023, https://hal.umontpellier.fr/hal-04144473v1
2023
Joshua Smith, Christopher Free, Cori Lopazanski, Julien Brun, Clarissa Anderson, et al.. A marine protected area network does not confer community structure resilience to a marine heatwave across coastal ecosystems. Global Change Biology, 2023, 29 (19), pp.5634-5651. https://hal.science/hal-04173111v1
2023
Laura Benestan, Nicolas Loiseau, Pierre-Edouard Guerin, Angel Pérez-Ruzafa, Aitor Forcada, et al.. Contrasting influence of seascape, space and marine reserves on genomic variation in multiple species. Ecography, 2023, 2023 (1), https://hal.umontpellier.fr/hal-03990321v1
2023
Stéphanie Manel, Emilie Boulanger, Laura Benestan, David Mouillot, Alicia Dalongeville. Revisiting long-distance dispersal in a coastal marine fish. Ecography, 2023, pp.e06867. https://hal.umontpellier.fr/hal-04262649v1
2023
Marion Muff, Mélissa Jaquier, Virginie Marques, Laurent Ballesta, Julie Deter, et al.. Environmental DNA highlights fish biodiversity in mesophotic ecosystems. Environmental DNA, 2023, 5 (1), pp.56-72. https://hal.science/hal-04118681v1
2023
Shona Murray, Jessica J. Meeuwig, Christopher D. H. Thompson, David Mouillot. Identifying the drivers of silky shark distribution and an evaluation of protection measures. Environmental Biology of Fishes, 2023, 106 (8), pp.1693--1713. https://hal.umontpellier.fr/hal-04262725v1
2023
David Mouillot, Suzie Derminon, Gaël Mariani, Inna Senina, Jean-Marc Fromentin, et al.. Industrial fisheries have reversed the carbon sequestration by tuna carcasses into emissions. Global Change Biology, 2023, https://hal.umontpellier.fr/hal-04151775v1
2023
Jessica Zamborain-Mason, Joshua E. Cinner, M. Aaron Macneil, Nicholas A. J. Graham, Andrew S. Hoey, et al.. Sustainable reference points for multispecies coral reef fisheries. Nature Communications, 2023, 14 (1), pp.5368. https://hal.umontpellier.fr/hal-04313528v1
2022
Benjamin Flück, Laëtitia Mathon, Stéphanie Manel, Alice Valentini, Tony Dejean, et al.. Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem. Scientific Reports, 2022, 12 (1), pp.10247. https://hal.umontpellier.fr/hal-03824009v1
2022
Alicia Dalongeville, Emilie Boulanger, Virginie Marques, Eric Charbonnel, Virginie Hartmann, et al.. Benchmarking eleven biodiversity indicators based on environmental DNA surveys: More diverse functional traits and evolutionary lineages inside marine reserves. Journal of Applied Ecology, 2022, 59 (11), pp.2803-2813. https://hal.science/hal-03892475v1
2022
Camille Mellin, Christina Hicks, Damien Fordham, Christopher Golden, Marian Kjellevold, et al.. Safeguarding nutrients from coral reefs under climate change. Nature Ecology & Evolution, 2022, 6 (12), pp.1808-1817. https://hal.umontpellier.fr/hal-03860643v1
2022
Jean‐baptiste Juhel, Virginie Marques, Rizkie Satriya Utama, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Estimating the extended and hidden species diversity from environmental DNA in hyper‐diverse regions. Ecography, 2022, 2022 (10), pp.e06299. https://hal.umontpellier.fr/hal-03823160v1
2022
Arnaud Auber, Conor Waldock, Anthony Maire, Eric Goberville, Camille Albouy, et al.. A functional vulnerability framework for biodiversity conservation. Nature Communications, 2022, 13 (1), pp.4774. https://hal.umontpellier.fr/hal-03773552v1
2022
Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, Trisha B. Atwood, et al.. Reply to: A path forward for analysing the impacts of marine protected areas. Nature, 2022, 607 (7917), pp.E3-E4. https://hal.science/hal-04203858v1
2022
Loïc Sanchez, Emilie Boulanger, Véronique Arnal, Pierre Boissery, Alicia Dalongeville, et al.. Ecological indicators based on quantitative eDNA metabarcoding: the case of marine reserves. Ecological Indicators, 2022, 140, pp.108966. https://hal.science/hal-03993372v1
2022
Juliette Langlois, François Guilhaumon, Florian Baletaud, Nicolas Casajus, Cédric de Almeida Braga, et al.. The aesthetic value of reef fishes is globally mismatched to their conservation priorities. PLoS Biology, 2022, 20 (6), pp.e3001640. https://hal.umontpellier.fr/hal-03695941v1
2022
Emilie Boulanger, Laura Benestan, Pierre-Edouard Guérin, Alicia Dalongeville, David Mouillot, et al.. Climate differently influences the genomic patterns of two sympatric marine fish species. Journal of Animal Ecology, 2022, Understanding climate change response in the age of genomics, 91 (6), pp.1180-1195. https://hal.umontpellier.fr/hal-03589729v1
2022
Joshua Cinner, Jessica Zamborain-Mason, Eva Maire, Andrew Hoey, Nicholas A.J. Graham, et al.. Linking key human-environment theories to inform the sustainability of coral reefs. Current Biology, 2022, 32 (12), pp.2610-2620. https://hal.science/hal-03798539v1
2022
Laura Mannocci, Sébastien Villon, Marc Chaumont, Nacim Guellati, Nicolas Mouquet, et al.. Leveraging social media and deep learning to detect rare megafauna in video surveys. Conservation Biology, 2022, 36 (1), pp.e13798. https://hal.science/hal-03405365v1
2022
Léo Delalandre, Pierre Gaüzère, Wilfried Thuiller, Marc Cadotte, Nicolas Mouquet, et al.. Functionally distinct tree species support long-term productivity in extreme environments. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1967), pp.20211694. https://hal.umontpellier.fr/hal-03622233v1
2022
Camille Magneville, Nicolas Loiseau, Camille Albouy, Nicolas Casajus, Thomas Claverie, et al.. mFD: an R package to compute and illustrate the multiple facets of functional diversity. Ecography, 2022, 2022 (1), https://hal.umontpellier.fr/hal-03566638v1
2022
Ignacio Pita, Raphael Seguin, Yunne-Jai Shin, Pauline Viguier, Thibault Catry, et al.. SAR Satellite Imagery Reveals the Impact of the Covid-19 Crisis on Ship Frequentation in the French Mediterranean Waters. Frontiers in Marine Science, 2022, 9, pp.845419. https://hal.science/hal-04363494v1
2022
Laëtitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1973), pp.20220162. https://hal.umontpellier.fr/hal-03669624v1
2022
Philipp Brun, Cyrille Violle, David Mouillot, Nicolas Mouquet, Brian J. Enquist, et al.. Plant community impact on productivity: Trait diversity or key(stone) species effects?. Ecology Letters, 2022, 25 (4), pp.913-925. https://hal.umontpellier.fr/hal-03589743v1
2022
Lila Desgarnier, David Mouillot, Laurent Vigliola, Marc Chaumont, Laura Mannocci. Putting eagle rays on the map by coupling aerial video-surveys and deep learning. Biological Conservation, 2022, 267, pp.#109494. https://hal.umontpellier.fr/hal-03708534v1
2022
Germain Boussarie, Paolo Momigliano, William D. Robbins, Lucas Bonnin, Jean-Francois Cornu, et al.. Identifying barriers to gene flow and hierarchical conservation units from seascape genomics: a modelling framework applied to a marine predator. Ecography, 2022, pp.e06158. https://hal.umontpellier.fr/hal-03669632v1
2022
Florian Baletaud, Antoine Gilbert, David Mouillot, Jean-Marie Come, Laurent Vigliola. Baited video reveal fish diversity in the vast inter-reef habitats of a marine tropical lagoon. Marine Biodiversity, 2022, 52 (2), pp.16. https://hal.umontpellier.fr/hal-03622228v1
2022
Anaëlle Durfort, Gaël Mariani, Vivitskaia Tulloch, Matthew S Savoca, Marc Troussellier, et al.. Recovery of carbon benefits by overharvested baleen whale populations is threatened by climate change. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1986), pp.20220375. https://hal.science/hal-03858200v1
2022
Jeaneth Machicao, Imed Riadh Farah, Leonardo Meneguzzi, Corrêa Pedro Luiz Pizzigatti, Alison Specht, et al.. Mitigation Strategies to Improve Reproducibility of Poverty Estimations From Remote Sensing Images Using Deep Learning. Earth and Space Science, 2022, 9 (8), pp.e2022EA002379. https://hal.science/hal-03761874v1
2022
Madeline Steinberg, Jean-Baptiste Juhel, Virginie Marques, Clara Péron, Régis Hocdé, et al.. Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 2022, 169 (1), pp.15. https://hal.umontpellier.fr/hal-03566643v1
2022
Cameron A. J. Walsh, Paolo Momigliano, Germain Boussarie, William D. Robbins, Lucas Bonnin, et al.. Genomic insights into the historical and contemporary demographics of the grey reef shark. Heredity, 2022, https://hal.umontpellier.fr/hal-03656474v1
2021
Conor Waldock, Rick D. Stuart-Smith, Camille Albouy, William W. L. Cheung, Graham J. Edgar, et al.. A quantitative review of abundance-based species distribution models. Ecography, 2021, 2022 (44), pp.1-18. https://hal.umontpellier.fr/hal-03566641v1
2021
Andrea Polanco Fernández, Maria Mutis Martinezguerra, Virginie Marques, Francisco Villa‐navarro, Giomar Helena Borrero Pérez, et al.. Detecting aquatic and terrestrial biodiversity in a tropical estuary using environmental DNA. Biotropica, 2021, 53 (6), pp.1606-1619. https://hal.science/hal-04203573v1
2021
Laëtitia Mathon, Alice Valentini, Pierre-Edouard Guerin, Eric Normandeau, Cyril Noël, et al.. Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification. Molecular Ecology Resources, 2021, 21 (7), pp.2565-2579. https://hal.umontpellier.fr/hal-03415607v1
2021
Matthew Mclean, David Mouillot, Aurore Maureaud, Tarek Hattab, M. Aaron Macneil, et al.. Disentangling tropicalization and deborealization in marine ecosystems under climate change. Current Biology, 2021, https://hal.science/hal-03338639v1
2021
David Mouillot, Nicolas Loiseau, Matthias Grenié, Adam Algar, Michele Allegra, et al.. The dimensionality and structure of species trait spaces. Ecology Letters, 2021, 24 (9), pp.1988-2009. https://hal.science/hal-03405358v1
2021
Lucas Bonnin, David Mouillot, Germain Boussarie, William D. Robbins, Jeremy J. Kiszka, et al.. Recent expansion of marine protected areas matches with home range of grey reef sharks. Scientific Reports, 2021, 11 (1), pp.14221. https://hal.umontpellier.fr/hal-03411088v1
2021
Sébastien Villon, Corina Iovan, Morgan Mangeas, Thomas Claverie, David Mouillot, et al.. Automatic underwater fish species classification with limited data using few-shot learning. Ecological Informatics, 2021, 63, pp.101320. https://hal.umontpellier.fr/hal-03415715v1
2021
Laura Benestan, Katharina Fietz, Nicolas Loiseau, Pierre-Edouard Guerin, Elena Trofimenko, et al.. Restricted dispersal in a sea of gene flow. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1951), pp.20210458. https://hal.umontpellier.fr/hal-03411085v1
2021
Emilie Boulanger, Nicolas Loiseau, Alice Valentini, Véronique Arnal, Pierre Boissery, et al.. Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1949), pp.20210112. https://univ-perp.hal.science/hal-04015973v1
2021
Matthew Mclean, Rick Stuart-Smith, Sébastien Villéger, Arnaud Auber, Graham Edgar, et al.. Trait similarity in reef fish faunas across the world’s oceans. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (12), pp.e2012318118. https://hal.science/hal-03435832v1
2021
Fabien Leprieur, Loic Pellissier, David Mouillot, Theo Gaboriau. Influence of historical changes in tropical reef habitat on the diversification of coral reef fishes. Scientific Reports, 2021, 11 (1), pp.20731. https://hal.umontpellier.fr/hal-03475051v1
2021
Jean-Baptiste Juhel, Virginie Marques, Andrea Polanco Fernandez, Giomar H. Borrero-Perez, Maria Mutis Martinezguerra, et al.. Detection of the elusive Dwarf sperm whale (Kogia sima) using environmental DNA at Malpelo island (Eastern Pacific, Colombia). Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03413614v1
2021
V. Parravicini, M. G. Bender, Sébastien Villéger, Fabien Leprieur, L. Pellissier, et al.. Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1961), pp.20211712. https://hal.umontpellier.fr/hal-03475052v1
2021
Andrea Polanco Fernández, Virginie Marques, Fabian Fopp, Jean-Baptiste Juhel, Giomar Helena Borrero-Pérez, et al.. Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes. Environmental DNA, 2021, The future of biodiversity monitoring and conservation utilizing environmental DNA, 3 (1), pp.142-156. https://hal.inrae.fr/hal-03810224v1
2021
Concepcion Marcos, David Diaz, Katharina Fietz, Aitor Forcada, Amanda Ford, et al.. Reviewing the Ecosystem Services, Societal Goods, and Benefits of Marine Protected Areas. Frontiers in Marine Science, 2021, 8, pp.613819. https://hal.umontpellier.fr/hal-03415610v1
2021
Salomé Stauffer, Meret Jucker, Thomas Keggin, Virginie Marques, Marco Andrello, et al.. How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?. Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03415700v1
2021
Giulia Francesca Azzurra Donati, Niklaus Zemp, Stephanie Manel, Maude Poirier, Thomas Claverie, et al.. Species ecology explains the spatial components of genetic diversity in tropical reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1959), pp.20211574. https://hal.umontpellier.fr/hal-03475048v1
2021
Nicolas Loiseau, Wilfried Thuiller, Rick Stuart-Smith, Vincent Devictor, Graham Edgar, et al.. Maximizing regional biodiversity requires a mosaic of protection levels. PLoS Biology, 2021, 19 (5), pp.e3001195. https://cnrs.hal.science/hal-03346482v1
2021
Angela Randazzo-Eisemann, Jesus Ernesto Arias-Gonzalez, Laure Velez, Melanie Mcfield, David Mouillot. The last hotspots of structural complexity as conservation targets in the Mesoamerican Coral Reef. Biological Conservation, 2021, 256, https://hal.umontpellier.fr/hal-04934784v1
2021
David Mouillot, Jean-Baptiste Juhel, Virginie Marques, Tristan Milhau, Camille Albouy, et al.. GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding. Diversity and Distributions, 2021, Environmental DNA‐based biodiversity assessment and conservation management in the Anthropocene, 27 (10), pp.1880-1892. https://hal.umontpellier.fr/hal-03415605v1
2021
Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, Trisha B. Atwood, et al.. Protecting the global ocean for biodiversity, food and climate. Nature, 2021, https://hal.umontpellier.fr/hal-03415689v1
2021
Virginie Marques, Paul Castagne, Andrea Polanco Fernandez, Giomar Helena Borrero-Perez, Régis Hocdé, et al.. Use of environmental DNA in assessment of fish functional and phylogenetic diversity. Conservation Biology, 2021, https://hal.umontpellier.fr/hal-03451172v1
2021
Juliette Murgier, Matthew Mclean, Anthony Maire, David Mouillot, Nicolas Loiseau, et al.. Rebound in functional distinctiveness following warming and reduced fishing in the North Sea. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1942), pp.20201600. https://hal.umontpellier.fr/hal-03415629v1
2021
Jeneen Hadj-Hammou, David Mouillot, Nicholas A. J. Graham. Response and Effect Traits of Coral Reef Fish. Frontiers in Marine Science, 2021, 8, pp.640619. https://hal.umontpellier.fr/hal-03413526v1
2021
Ignacio Pita, David Mouillot, Fabien Moullec, Yunne-Jai Shin. Contrasted patterns in climate change risk for Mediterranean fisheries. Global Change Biology, 2021, https://hal.umontpellier.fr/hal-03415637v1
2020
Stéphanie Manel, Pierre-Edouard Guerin, David Mouillot, Simon Blanchet, Laure Velez, et al.. Global determinants of freshwater and marine fish genetic diversity. Nature Communications, 2020, 11 (1), pp.692. https://ut3-toulouseinp.hal.science/hal-03043658v1
2020
Sébastien Villon, David Mouillot, Marc Chaumont, Gérard Subsol, Thomas Claverie, et al.. A new method to control error rates in automated species identification with deep learning algorithms. Scientific Reports, 2020, 10 (1), https://hal-lirmm.ccsd.cnrs.fr/lirmm-03002261v1
2020
David Mouillot, Laure Velez, Eva Maire, Alizée Masson, Christina Hicks, et al.. Global correlates of terrestrial and marine coverage by protected areas on islands. Nature Communications, 2020, 11 (1), https://hal.science/hal-02993050v1
2020
Nicolas Loiseau, Nicolas Mouquet, Nicolas Casajus, Matthias Grenié, Maya Guéguen, et al.. Global distribution and conservation status of ecologically rare mammal and bird species. Nature Communications, 2020, 11 (1), https://cnrs.hal.science/hal-02961326v1
2020
Virginie Marques, Pierre-Edouard Guerin, Mathieu Rocle, Alice Valentini, Stephanie Manel, et al.. Blind assessment of vertebrate taxonomic diversity across spatial scales by clustering environmental DNA metabarcoding sequences. Ecography, 2020, pp.1779-1790. https://hal.umontpellier.fr/hal-03411045v1
2020
Jean-Baptiste Juhel, Rizkie Satriya Utama, Virginie Marquès, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1930), pp.20200248. https://hal.science/hal-02900375v1
2020
Emilie Boulanger, Alicia Dalongeville, Marco Andrello, David Mouillot, Stephanie Manel. Spatial graphs highlight how multi-generational dispersal shapes landscape genetic patterns. Ecography, 2020, 43, pp.1167-1179. https://hal.umontpellier.fr/hal-03404999v1
2020
Joshua Cinner, Jessica Zamborain-Mason, Georgina Gurney, Nicholas Graham, M. Aaron Macneil, et al.. Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world. Science, 2020, 368 (6488), pp.307-311. https://hal.science/hal-03090286v1
2020
Camille Albouy, Valentine Delattre, Giulia Donati, Thomas Frölicher, Severine Albouy-Boyer, et al.. Global vulnerability of marine mammals to global warming. Scientific Reports, 2020, 10 (1), https://hal.umontpellier.fr/hal-03403188v1
2020
Kadar Kadarusman, Hagi Yulia Sugeha, Laurent Pouyaud, Régis Hocdé, Intanurfemi Hismayasari, et al.. A thirteen-million-year divergence between two lineages of Indonesian coelacanths. Scientific Reports, 2020, 10 (1), https://ird.hal.science/ird-02438220v1
2020
Alienor Jeliazkov, Darko Mijatovic, Stéphane Chantepie, Nigel Andrew, Raphaël Arlettaz, et al.. A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data , 2020, 7 (1), pp.6. https://univ-lyon1.hal.science/hal-02438887v1
2020
Gaël Mariani, William Cheung, Arnaud Lyet, Enric Sala, Juan Mayorga, et al.. Let more big fish sink: Fisheries prevent blue carbon sequestration—half in unprofitable areas. Science Advances , 2020, 6 (44), pp.eabb4848. https://hal.science/hal-02993112v1
2020
Eva Maire, Stephanie d'Agata, Catherine Aliaume, David Mouillot, Emily S. Darling, et al.. Disentangling the complex roles of markets on coral reefs in northwest Madagascar. Ecology and Society, 2020, 25 (3), pp.23. https://hal.umontpellier.fr/hal-03411039v1
2020
Fraser A. Januchowski-Hartley, Laurent Vigliola, Eva Maire, Michel Kulbicki, David Mouillot. Low fuel cost and rising fish price threaten coral reef wilderness. Conservation Letters, 2020, 13 (3), pp.e12706. https://hal.umontpellier.fr/hal-03410890v1
2019
Lauric Thiault, Camilo Mora, Joshua Cinner, William Cheung, Nicholas Graham, et al.. Escaping the perfect storm of simultaneous climate change impacts on agriculture and marine fisheries. Science Advances , 2019, 5 (11), pp.eaaw9976. https://univ-perp.hal.science/hal-02432827v2
2019
Matthew Mclean, David Mouillot, Sébastien Villéger, Nicholas a J Graham, Arnaud Auber. Interspecific differences in environmental response blur trait dynamics in classic statistical analyses. Marine Biology, 2019, 166 (12), https://hal.science/hal-03099050v1
2019
Emily S Darling, Tim R Mcclanahan, Joseph Maina, Georgina G Gurney, Nicholas a J Graham, et al.. Strategic conservation and management of coral reefs in the Anthropocene. Nature Ecology & Evolution, 2019, 3 (9), pp.1341-1350. https://hal.science/hal-03033541v1
2019
Tom Letessier, David Mouillot, Phil Bouchet, Laurent Vigliola, Marjorie Fernandes, et al.. Remote reefs and seamounts are the last refuges for marine predators across the Indo-Pacific. PLoS Biology, 2019, 17 (8), pp.e3000366. https://hal.umontpellier.fr/hal-02413901v1
2019
Matthew Mclean, Arnaud Auber, Nicholas Graham, Peter Houk, Sebastien Villeger, et al.. Trait structure and redundancy determine sensitivity to disturbance in marine fish communities. Global Change Biology, 2019, 25 (10), pp.3424-3437. https://hal.science/hal-02324196v1
2019
Stéphanie Manel, Nicolas Loiseau, Marco Andrello, Katharina Fietz, Raquel Goñi, et al.. Long-Distance Benefits of Marine Reserves: Myth or Reality?. Trends in Ecology & Evolution, 2019, 34 (4), pp.342-354. https://univ-perp.hal.science/hal-02331101v1
2019
Florent Mazel, Matthew W. Pennell, Marc W. Cadotte, Sandra Diaz, Giulio Valentino Dalla Riva, et al.. Reply to: \"Global conservation of phylogenetic diversity captures more than just functional diversity\". Nature Communications, 2019, 10, pp.858. https://hal.science/hal-02439689v1
2019
Jean-Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B Letessier, Jessica J Meeuwig, et al.. Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior. Scientific Reports, 2019, 9, pp.2897. https://hal.umontpellier.fr/hal-02413866v1
2019
Matthew Mclean, David Mouillot, Martin Lindegren, Sebastien Villeger, Georg Engelhard, et al.. Fish communities diverge in species but converge in traits over three decades of warming. Global Change Biology, 2019, 25 (11), pp.3972--3984. https://hal.science/hal-02439731v1
2019
Matthew J. Mclean, David Mouillot, Nicolas Goascoz, Ivan Schlaich, Arnaud Auber. Functional reorganization of marine fish nurseries under climate warming. Global Change Biology, 2019, 25 (2), pp.660--674. https://hal.science/hal-02439728v1
2019
Fabien Leprieur, Theo Gaboriau, Camille Albouy, Patrice Descombes, David Mouillot, et al.. Ecological constraints coupled with deep-time habitat dynamics predict the latitudinal diversity gradient in reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2019, 286 (1911), pp.20191506. https://hal.science/hal-02434172v1
2019
Lucas Bonnin, William D. Robbins, Germain Boussarie, Jeremy J. Kiszka, Laurent Dagorn, et al.. Repeated long-range migrations of adult males in a common Indo-Pacific reef shark. Coral Reefs, 2019, https://hal.science/hal-02403275v1
2018
Alicia Dalongeville, Marco Andrello, David Mouillot, Stephane Lobreaux, Marie-Josee Fortin, et al.. Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale. Evolutionary Applications, 2018, 11 (8), pp.1437-1447. https://hal.umontpellier.fr/hal-02002253v1
2018
Théo Gaboriau, Fabien Leprieur, David Mouillot, Nicolas Hubert. Influence of the geography of speciation on current patterns of coral reef fish biodiversity across the Indo-Pacific. Ecography, 2018, 41 (8), pp.1295-1306. https://hal.science/hal-01959407v1
2018
Florent Mazel, Matthew W. Pennell, Marc W. Cadotte, Sandra Diaz, Giulio Valentino Dalla Riva, et al.. Prioritizing phylogenetic diversity captures functional diversity unreliably. Nature Communications, 2018, 9, https://hal.umontpellier.fr/hal-02002355v1
2018
Germain Boussarie, Judith Bakker, Owen S. Wangensteen, Stefano Mariani, Lucas Bonnin, et al.. Environmental DNA illuminates the dark diversity of sharks. Science Advances , 2018, 4 (5), pp.1-8. https://hal.science/hal-01826693v1
2018
Alicia Dalongeville, Laura Benestan, David Mouillot, Stephane Lobreaux, Stephanie Manel. Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus). BMC Genomics, 2018, 19 (1), https://hal.science/hal-01826711v1
2018
Jean-Baptiste Juhel, Laurent Vigliola, David Mouillot, Michel Kulbicki, Tom B. Letessier, et al.. Reef accessibility impairs the protection of sharks. Journal of Applied Ecology, 2018, 55 (2), pp.673--683. https://hal.science/hal-01826718v1
2018
Matthias Grenié, David Mouillot, Sebastien Villeger, Pierre Denelle, Caroline M. Tucker, et al.. Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation. Biological Conservation, 2018, 226, pp.288-299. https://hal.umontpellier.fr/hal-02002180v1
2018
Matthew Mclean, David Mouillot, Martin Lindegren, Georg Engelhard, Sebastien Villeger, et al.. A Climate-Driven Functional Inversion of Connected Marine Ecosystems. Current Biology, 2018, 28 (22), pp.3654. https://hal.science/hal-01994182v1
2018
Eva Maire, Sebastien Villeger, Nicholas A. J. Graham, Andrew S. Hoey, Joshua Cinner, et al.. Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific. Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1883), https://hal.umontpellier.fr/hal-02002283v1
2018
Matthew Mclean, David Mouillot, Arnaud Auber. Ecological and life history traits explain a climate-induced shift in a temperate marine fish community. Marine Ecology Progress Series, 2018, 606, pp.175-186. https://hal.science/hal-01994183v1
2018
Joshua Cinner, Eva Maire, Cindy Huchery, M. Aaron Macneil, Graham Graham, et al.. Gravity of human impacts mediates coral reef conservation gains. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (27), pp.E6116-E6125. https://hal.umontpellier.fr/hal-01824520v1
2018
Rafael P. Leitao, Jansen Zuanon, David Mouillot, Cecilia G. Leal, Robert M. Hughes, et al.. Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams. Ecography, 2018, 41 (1), pp.219--232. https://hal.science/hal-01826757v1
2018
Rafael A. Magris, Marco Andrello, Robert L. Pressey, David Mouillot, Alicia Dalongeville, et al.. Biologically representative and well-connected marine reserves enhance biodiversity persistence in conservation planning. Conservation Letters, 2018, 11 (4), pp.e12439. https://hal.umontpellier.fr/hal-02002276v1
2018
David Mouillot, Sébastien Villon, Marc Chaumont, Gérard Subsol, Emily Darling, et al.. A Deep learning method for accurate and fast identification of coral reef fishes in underwater images. Ecological Informatics, 2018, 48, pp.238-244. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01884005v1
2017
Cyrille Violle, Wilfried Thuiller, Nicolas Mouquet, François Munoz, Nathan J.B. Kraft, et al.. A Common Toolbox to Understand, Monitor or Manage Rarity? A Response to Carmona et al.. Trends in Ecology & Evolution, 2017, 32 (12), pp.891-893. https://hal.science/hal-01932911v1
2017
Sébastien Villéger, Sébastien Brosse, Maud Mouchet, David Mouillot, Michael J. Vanni. Functional ecology of fish: current approaches and future challenges. Aquatic Sciences - Research Across Boundaries, 2017, 79 (4), pp.783--801. https://hal.science/hal-01932917v1
2017
Arthur Escalas, Marc Troussellier, Tong Yuan, Thierry Bouvier, Corinne Bouvier, et al.. Functional diversity and redundancy across fish gut, sediment and water bacterial communities. Environmental Microbiology, 2017, 19 (8), pp.3268 - 3282. https://hal.umontpellier.fr/hal-01928275v1
2017
Mariana G. Bender, Fabien Leprieur, David Mouillot, Michel Kulbicki, Valeriano Parravicini, et al.. Isolation drives taxonomic and functional nestedness in tropical reef fish faunas. Ecography, 2017, 40 (3), pp.425--435. https://hal.science/hal-01928118v1
2017
Claire Jacquet, David Mouillot, Michel Kulbicki, Dominique Gravel. Extensions of Island Biogeography Theory predict the scaling of functional trait composition with habitat area and isolation. Ecology Letters, 2017, 20 (2), pp.135--146. https://hal.science/hal-01927194v1
2017
Judith Bakker, Owen Wangensteen, Demian Chapman, Germain Boussarie, Dayne Buddo, et al.. Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact. Scientific Reports, 2017, 7 (1), pp.16886. https://hal.umontpellier.fr/hal-01929216v1
2017
Eduardo Ottimofiore, Camille Albouy, Fabien Leprieur, Patrice Descombes, Michel Kulbicki, et al.. Responses of coral reef fishes to past climate changes are related to life-history traits. Ecology and Evolution, 2017, 7 (6), pp.1996-2005. https://hal.science/hal-01928119v1
2017
Marco Andrello, François Guilhaumon, Camille Albouy, Valeriano Parravicini, Joeri Scholtens, et al.. Global mismatch between fishing dependency and larval supply from marine reserves. Nature Communications, 2017, 8, pp.16039. https://hal.umontpellier.fr/hal-01851377v1
2017
Marc Troussellier, Arthur Escalas, Thierry Bouvier, David Mouillot. Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity. Frontiers in Microbiology, 2017, 8, pp.947. https://hal.umontpellier.fr/hal-01928018v1
2016
Stephanie d'Agata, Laurent Vigliola, Nicholas Graham, Laurent Wantiez, Valeriano Parravicini, et al.. Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1844), https://hal.umontpellier.fr/hal-01926552v1
2016
Nathalie Seddon, Georgina Mace, Shahid Naeem, Joseph Tobias, Alex Pigot, et al.. Biodiversity in the Anthropocene: prospects and policy. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1844), https://hal.umontpellier.fr/hal-01929249v1
2016
Fabien Leprieur, Simona Colosio, Patrice Descombes, Valeriano Parravicini, Michel Kulbicki, et al.. Historical and contemporary determinants of global phylogenetic structure in tropical reef fish faunas. Ecography, 2016, 39 (9), pp.825--835. https://hal.science/hal-01925510v1
2016
Arnaud Catherine, Selma Maloufi, David Mouillot, Marc Troussellier, Cecile Bernard. Patterns and multi-scale drivers of phytoplankton species richness in temperate peri-urban lakes. Science of the Total Environment, 2016, 559, pp.74 - 83. https://hal.umontpellier.fr/hal-01923947v1
2016
Joshua E. Cinner, Cindy Huchery, M. Aaron Macneil, Nicholas A.J. Graham, Tim R. Mcclanahan, et al.. Bright spots among the world’s coral reefs. Nature, 2016, 535 (7612), pp.416--419. https://hal.science/hal-01925512v1
2016
Selma Maloufi, Arnaud Catherine, David Mouillot, Clarisse Louvard, Alain Couté, et al.. Environmental heterogeneity among lakes promotes hyper β-diversity across phytoplankton communities. Freshwater Biology, 2016, 61 (5), pp.633 - 645. https://hal.umontpellier.fr/hal-01923982v1
2016
Alicia Dalongeville, Marco Andrello, David Mouillot, Camille Albouy, Stéphanie Manel. Ecological traits shape genetic diversity patterns across the Mediterranean Sea: a quantitative review on fishes. Journal of Biogeography, 2016, 43 (4), pp.845-857. https://hal.science/hal-01925270v1
2016
Eva Maire, Joshua Cinner, Laure Velez, Cindy Huchery, Camilo Mora, et al.. How accessible are coral reefs to people? A global assessment based on travel time. Ecology Letters, 2016, 19 (4), pp.351--360. https://hal.science/hal-01925269v1
2016
Haizea Jimenez, Pascal Dumas, David Mouillot, Lionel Bigot, Jocelyne Ferraris. Harvesting effects on functional structure and composition of tropical invertebrate assemblages. ICES Journal of Marine Science, 2016, 73 (2), pp.420 - 428. https://hal.univ-reunion.fr/hal-01908217v1
2016
Rafael P. Leitão, Jansen Zuanon, Sébastien Villéger, Stephen E. Williams, Christopher Baraloto, et al.. Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1828), https://hal.science/hal-01532639v1
2016
D Mouillot, V Parravicini, David R. Bellwood, F Leprieur, D Huang, et al.. Global marine protected areas do not secure the evolutionary history of tropical corals and fishes. Nature Communications, 2016, 7, https://univ-perp.hal.science/hal-01282920v1
2016
Fabien Leprieur, Patrice Descombes, Théo Gaboriau, Peter Cowman, Valeriano Parravicini, et al.. Plate tectonics drive tropical reef biodiversity dynamics. Nature Communications, 2016, 7, pp.11461. https://hal.umontpellier.fr/hal-01922802v1
2015
Camille Albouy, Fabien Leprieur, François Le Loc’h, Nicolas Mouquet, Christine Meynard, et al.. Projected impacts of climate warming on the functional and phylogenetic components of coastal Mediterranean fish biodiversity. Ecography, 2015, 38 (7), pp.681-689. https://hal.umontpellier.fr/hal-01922190v1
2015
Marco Andrello, Martin Nilsson Jacobi, Stéphanie Manel, Wilfried Thuiller, David Mouillot. Extending networks of protected areas to optimize connectivity and population growth rate. Ecography, 2015, 38 (3), pp.273 - 282. https://hal.umontpellier.fr/hal-01841278v1
2015
Marco Andrello, David Mouillot, Samuel Somot, Wilfried Thuiller, Stéphanie Manel. Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas. Diversity and Distributions, 2015, 21 (2), pp.139 - 150. https://hal.umontpellier.fr/hal-01841284v1
2015
Boris R. Krasnov, Georgy I. Shenbrot, Irina S. Khokhlova, Michal Stanko, Serge Morand, et al.. Assembly rules of ectoparasite communities across scales: combining patterns of abiotic factors, host composition, geographic space, phylogeny and traits. Ecography, 2015, 38 (2), pp.184-197. https://hal.umontpellier.fr/hal-03039087v1
2015
Marta Coll, Jeroen Steenbeek, Frida Ben Rais Lasram, David Mouillot, Philippe Cury. 'Low-hanging fruit' for conservation of marine vertebrate species at risk in the Mediterranean Sea: Priority areas to protect marine Mediterranean vertebrate species at risk. Global Ecology and Biogeography, 2015, 24 (2), pp.226--239. https://hal.umontpellier.fr/hal-01840071v1
2015
Nicholas Graham, Simon Jennings, M. Aaron Macneil, David Mouillot, Shaun Wilson. Predicting climate-driven regime shifts versus rebound potential in coral reefs. Nature, 2015, 518 (7537), pp.94 - 97. https://hal.umontpellier.fr/hal-01841302v1
2015
Florent Mazel, Julien Renaud, François Guilhaumon, David Mouillot, Dominique Gravel, et al.. Mammalian phylogenetic diversity-area relationships at a continental scale.. Ecology, 2015, 96 (10), pp.2814-22. https://hal.science/hal-01930199v1
2015
Camille Albouy, Frida Ben Rais Lasram, Laure Velez, François Guilhaumon, Christine Meynard, et al.. FishMed: traits, phylogeny, current and projected species distribution of Mediterranean fishes, and environmental data. Ecology, 2015, 96 (8), pp.2312-2313. https://hal.science/hal-01605821v1
170 article(s)
Autres publications
2023
Clément Dorffer, Frédéric Jourdin, David Mouillot, Rodolphe Devillers, Ronan Fablet. Observation-only learning of 4DVarNet neural schemes for the reconstruction of sea surface turbidity dynamics from gappy satellite images. EGU 2023: European Geophysical Union, European Geophysical Union, Apr 2023, Vienna, Austria. pp.1-1, https://hal.science/hal-04363493v1
2022
Laura Mannocci, Frédérique Carcaillet, Marc Chaumont, Bérénice Givord-Coupeau, Corina Iovan, et al.. Artificial Intelligence and Social Networks Can Help to Protect the Famous Dugong. 2022, https://hal-lirmm.ccsd.cnrs.fr/lirmm-03824398v1
2022
Rodolphe Devillers, Alicia Dalongeville, Sébastien Desbureaux, Julia Girard, Laure Velez, et al.. Assessing the Long-Term Effects of Marine Protected Areas on Poverty: A 18-year Experiment in Tanzania. 12th WIOMSA Scientific Symposium, WIOMSA, Oct 2022, Port Elizabeth, South Africa. https://hal.science/hal-04363809v1
2022
Ali Ben Abbess, Leonardo Meneguzzi, Pedro Pizzigatti Corrêa, David Mouillot, Romain David, et al.. Checklist Strategies to Improve the Reproducibility of Deep Learning Experiments with an Illustration. RDA 19th Plenary Meeting, Part Of International Data Week, Jun 2022, Seoul, South Korea. , 2022, https://hal.science/hal-03738323v1
2022
Jeaneth Machicao, Ali Ben Abbes, Leandro Meneguzzi, Pedro Corrêa, Alison Specht, et al.. Reproducing Deep Learning experiments: common challenges and recommendations for improvement. RDA 19th Plenary Meeting, Part Of International Data Week, Jun 2022, Seoul, South Korea. , 2022, https://hal.science/hal-03719090v1
2021
Thomas Claverie, Marc Chaumont, Karen Godary-Dejean, Adrien Hereau, Lionel Lapierre, et al.. Coupling underwater autonomous vehicles and automatic video analysis for efficient monitoring of coral reef ecosystems: promises and challenges. ICRS 2021 - 15th International Coral Reef Symposium, Jul 2021, Bremen (virtual), Germany. https://hal-lirmm.ccsd.cnrs.fr/lirmm-03820865v1
2021
Alison Specht, Jeaneth Machicao, Pedro Corrêa, Rodolphe Devillers, Yasuhisa Kondo, et al.. The detection of socio-economic impacts of protected area creation. TERN Science Symposium 2021, Jul 2021, Online, Australia. pp.34-40, https://hal.science/hal-04371761v1
2019
David Mouillot, Stéphanie Manel. Indicateurs de l'état de santé des écosystèmes marins à partir de l'ADN environnemental. John Bandelier; Bernard Hubert; Catherine Jeandel; Philippe Lebaron; Michel Petit; Hélène Rey-Valette; Pierre Soler. Les dossiers d'Agropolis International n° 24 : Sciences marines et littorales en Occitanie, 24, Agropolis International, pp.92-92, 2019. https://hal.science/hal-04917935v1
2019
David Mouillot, Marco Andrello, Stéphanie Manel. L'impact du réseau d'AMP en Méditerranée sur la conservation et l'exploitation des ressources marines vivantes : exemple du mérou brun. John Bandelier; Bernard Hubert; Catherine Jeandel; Philippe Lebaron; Michel Petit; Hélène Rey-Valette; Pierre Soler. Les dossiers d'Agropolis International n° 24 : Sciences marines et littorales en Occitanie, 24, Agropolis International, pp.78-78, 2019. https://hal.science/hal-04917930v1
2018
Sébastien Villon, David Mouillot, Marc Chaumont, Emily Darling, Gérard Subsol, et al.. A deep learning algorithm for automatic identification of coral reef fish species on images. WCMB 2018 - 4th World Conference on Marine Biodiversity, May 2018, Montréal, Canada. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01883997v1
2016
Sébastien Villon, Marc Chaumont, Gérard Subsol, Sébastien Villéger, Thomas Claverie, et al.. Coral reef fish detection and recognition in underwater videos by supervised machine learning : Comparison between Deep Learning and HOG+SVM methods. ACIVS 2016 - 17th International Conference on Advanced Concepts for Intelligent Vision Systems, Oct 2016, Lecce, Italy. https://hal.science/hal-01374123v1
2015
Corentin Abgrall, Matthieu Chauvat, Estelle Langlois, Mickael Hedde, David Mouillot, et al.. Variations et liens fonctionnels entre les compartiments épigés et endogés le long d’un gradient d’inondation. Colloque TEBIS (Traits Écologiques et Biologiques des Invertébrés du Sol), 4ème édition, Oct 2015, Rouen, France. https://hal.science/hal-02437858v1
12 article(s)
Joshua G Smith, Cori Lopazanski, Christopher M Free, Julien Brun, Clarissa Anderson, et al.. Conservation benefits of a large marine protected area network that spans multiple ecosystems. Conservation Biology, In press, https://hal.science/hal-04916457v1
2024
Letizia Lamperti, Olivier François, David Mouillot, Laëtitia Mathon, Théophile Sanchez, et al.. A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: an application to fish eDNA surveys. Methods in Ecology and Evolution, 2024, 15 (12), pp.2301-2315. https://hal.science/hal-04917927v1
2024
Conor Waldock, Eva Maire, Camille Albouy, Vania Andreoli, Maria Beger, et al.. Micronutrient levels of global tropical reef fish communities differ from fisheries capture. People and Nature, 2024, 7 (1), pp.32-51. https://ird.hal.science/ird-04933786v1
2024
Ulysse Flandrin, David Mouillot, Camille Albouy, Sonia Bejarano, Nicolas Casajus, et al.. Fish communities can simultaneously contribute to nature and people across the world's tropical reefs. One Earth, 2024, 7 (10), pp.1772-1785. https://hal.science/hal-04746202v1
2024
David Mouillot, Laure Velez, Camille Albouy, Nicolas Casajus, Joachim Claudet, et al.. The socioeconomic and environmental niche of protected areas reveals global conservation gaps and opportunities. Nature Communications, 2024, 15 (1), pp.9007. https://hal.science/hal-04746119v1
2024
Romane Rozanski, Laure Velez, Régis Hocdé, Agnès Duhamet, Conor Waldock, et al.. Seasonal dynamics of Mediterranean fish communities revealed by eDNA: Contrasting compositions across depths and Marine Fully Protected Area boundaries. Ecological Indicators, 2024, 166, pp.112290. https://hal.science/hal-04645476v1
2024
A. Ben Abbes, Jeaneth Machicao, Pedro L.P. Corrêa, Alison Specht, Rodolphe Devillers, et al.. DeepWealth: A generalizable open-source deep learning framework using satellite images for well-being estimation. SoftwareX, 2024, 27, pp.101785. https://hal.science/hal-04645479v1
2024
Nicolas Loiseau, David Mouillot, Laure Velez, Raphaël Seguin, Nicolas Casajus, et al.. Inferring the extinction risk of marine fish to inform global conservation priorities. PLoS Biology, 2024, 22 (8), pp.e3002773. https://hal.science/hal-04689827v1
2024
Laura Mannocci, Solène Derville, Raphael Seguin, David Mouillot. Aerial Video Surveys and Spatial Prioritization Reveal Conservation Opportunities for Endangered Dugongs in New Caledonia. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, 34 (8), https://hal.science/hal-04689829v1
2024
Aurore Receveur, Fabien Leprieur, Kari Ellingsen, David Keith, Kristin Kleisner, et al.. Long‐term changes in taxonomic and functional composition of European marine fish communities. Ecography, 2024, 2024 (9), pp.e07234. https://hal.umontpellier.fr/hal-04664052v1
2024
Nicolas Mouquet, Juliette Langlois, Nicolas Casajus, Arnaud Auber, Ulysse Flandrin, et al.. Low human interest for the most at-risk reef fishes worldwide. Science Advances , 2024, 10 (29), https://hal.umontpellier.fr/hal-04664116v1
2024
Loïc Sanchez, Nicolas Loiseau, Graham J Edgar, Cyril Hautecoeur, Fabien Leprieur, et al.. Rarity mediates species‐specific responses of tropical reef fishes to protection. Ecology Letters, 2024, 27 (3), https://hal.science/hal-04727433v1
2024
Jeneen Hadj-Hammou, Joshua E. Cinner, Diego R. Barneche, Iain R. Caldwell, David Mouillot, et al.. Global patterns and drivers of fish reproductive potential on coral reefs. Nature Communications, 2024, 15 (1), pp.6105. https://hal.umontpellier.fr/hal-04824348v1
2024
Cyprien Alexandre, Rodolphe Devillers, David Mouillot, Raphael Seguin, Thibault Catry. Ship Detection With SAR C-Band Satellite Images: A Systematic Review. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 2024, 17, pp.14353 - 14367. https://ird.hal.science/ird-04749322v1
2024
Tom B. Letessier, David Mouillot, Laura Mannocci, Hanna Jabour Christ, Elamin Mohammed Elamin, et al.. Divergent responses of pelagic and benthic fish body-size structure to remoteness and protection from humans. Science, 2024, 383 (6686), pp.976--982. https://hal.umontpellier.fr/hal-04531680v1
2024
Thomas Bockel, Noémie Bossut, Nicolas Mouquet, David Mouillot, Quentin Fontaine, et al.. Quantifying the impact of small boats on Posidonia seagrass meadows: Methods and path for future efficient management of anchoring pressure. Ocean and Coastal Management, 2024, 259, https://hal.umontpellier.fr/hal-04935438v1
2024
Stéphanie Manel, Laetitia Mathon, David Mouillot, Morgane Bruno, Alice Valentini, et al.. Benchmarking fish biodiversity of seaports with eDNA and nearby marine reserves. Conservation Letters, 2024, n/a, pp.e13001. https://hal.umontpellier.fr/hal-04492229v1
2024
Gaël Mariani, Fabien Moullec, Trisha B Atwood, Beverley Clarkson, Richard T Conant, et al.. Co-benefits of and trade-offs between natural climate solutions and Sustainable Development Goals. Frontiers in Ecology and the Environment, 2024, e2807 [10 p.]. https://hal.umontpellier.fr/hal-04824355v1
2024
Raphael Seguin, Vincent Delbar, Filipe Batista E Silva, David Mouillot. Protected areas shape the distribution of tourism across rural Europe. PEOPLE AND NATURE, 2024, 6 (6), pp.2246--2260. https://hal.umontpellier.fr/hal-04935540v1
Gaël Mariani, Fabien Moullec, Trisha B Atwood, Beverley Clarkson, Richard T Conant, et al.. Co-benefits and trade-offs between Natural Climate Solutions and Sustainable Development Goals. Frontiers in Ecology and the Environment, In press. https://hal.science/hal-04756965v1
2024
Mélissa Jaquier, Camille Albouy, Wilhelmine Bach, Conor Waldock, Virginie Marques, et al.. Environmental DNA recovers fish composition turnover of the coral reefs of West Indian Ocean islands. Ecology and Evolution, 2024, 14 (5), pp.e11337. https://hal.umontpellier.fr/hal-04666178v1
2024
Laetitia Mathon, Florian Baletaud, Anne Lebourges-Dhaussy, Gaël Lecellier, Christophe Menkes, et al.. Three‐dimensional conservation planning of fish biodiversity metrics to achieve the deep‐sea 30×30 conservation target. Conservation Biology, 2024, sous presse/early view. https://hal.science/hal-04693805v1
2024
Julie Deter, Laurent Ballesta, Adèle Barroil, Guilhem Marre, Nadia Faure, et al.. Gigantic breeding colonies of a marine fish in the Mediterranean. Current Biology, 2024, 34 (18), pp.R852-R853. https://hal.umontpellier.fr/hal-04754482v1
2024
Franck Pichot, David Mouillot, Jean-Baptiste Juhel, Alicia Dalongeville, Olivier Adam, et al.. Mediterranean Islands as Refugia for Elasmobranch and Threatened Fishes. Diversity and Distributions, 2024, pp.e13937. https://hal.umontpellier.fr/hal-04824360v1
2024
Iain R. Caldwell, Tim R. Mcclanahan, Remy M. Oddenyo, Nicholas A. J. Graham, Maria Beger, et al.. Protection efforts have resulted in ∼ 10% of existing fish biomass on coral reefs. Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (42), https://hal.umontpellier.fr/hal-04935440v1
2024
Valentine Fleuré, Camille Magneville, David Mouillot, Sébastien Villéger. Automated identification of invasive rabbitfishes in underwater images from the Mediterranean Sea. Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, 34 (1), pp.e4073. https://hal.science/hal-04491791v1
2024
Paula A. Ruiz-Ruiz, Jose A. Sanabria-Fernandez, Jasmin M. Schuster, Joanna K. Schmid, Susan C. Baker, et al.. Overcome imposter syndrome: Contribute to working groups and build strong networks. Biological Conservation, 2024, 293, pp.110566. https://hal.umontpellier.fr/hal-04645431v1
2024
Thomas Bockel, Guilhem Marre, Gwenaëlle Delaruelle, Noémie Agel, Pierre Boissery, et al.. Early signals of Posidonia oceanica meadows recovery in a context of wastewater treatment improvements. Marine Pollution Bulletin, 2024, 201, pp.116193. https://hal.umontpellier.fr/hal-04492231v1
2024
Eva Maire, James P. W. Robinson, Matthew Mclean, Suchinta Arif, Jessica Zamborain-Mason, et al.. Managing nutrition-biodiversity trade-offs on coral reefs. Current Biology, 2024, https://hal.umontpellier.fr/hal-04727758v1
2024
Simon J. Brandl, Jeremy Carlot, Rick D. Stuart-Smith, Sally A. Keith, Nicholas A. J. Graham, et al.. Unifying Coral Reef States Through Space and Time Reveals a Changing Ecosystem. Global Ecology and Biogeography, 2024, 33 (12), pp.e13926. https://hal.umontpellier.fr/hal-04824351v1
2024
Sébastien Desbureaux, Julia Girard, Alicia Dalongeville, Rodolphe Devillers, David Mouillot, et al.. The long‐term impacts of Marine Protected Areas on fish catch and socioeconomic development in Tanzania. Conservation Letters, 2024, 17 (6), pp.e13048. https://hal.inrae.fr/hal-04724396v1
2024
Camille Mellin, Stuart Brown, Neal Cantin, Eduardo Klein-Salas, David Mouillot, et al.. Cumulative risk of future bleaching for the world’s coral reefs. Science Advances, 2024, 10 (26), pp.eadn9660. https://hal.umontpellier.fr/hal-04727761v1
2024
Bastien Macé, David Mouillot, Alicia Dalongeville, Morgane Bruno, Julie Deter, et al.. The Tree of Life eDNA metabarcoding reveals a similar taxonomic richness but dissimilar evolutionary lineages between seaports and marine reserves. Molecular Ecology, 2024, 33 (12), pp.e17373. https://hal.science/hal-04645519v1
2023
Letizia Lamperti, Théophile Sanchez, Sara Si Moussi, David Mouillot, Camille Albouy, et al.. New deep learning-based methods for visualizing ecosystem properties using environmental DNA metabarcoding data. Molecular Ecology Resources, 2023, 23 (8), pp.1946-1958. https://hal.umontpellier.fr/hal-04313526v1
2023
Céline Condachou, Tristan Milhau, Jérôme Murienne, Sébastien Brosse, Sébastien Villéger, et al.. Inferring functional diversity from environmental DNA metabarcoding. Environmental DNA, 2023, 5 (5), pp.934-944. https://hal.science/hal-04269097v1
2023
Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, Trisha B. Atwood, et al.. Reply to: Global effects of marine protected areas on food security are unknown. Nature, 2023, 621 (7979), pp.E34-U24. https://hal.science/hal-04384154v1
2023
Christopher Free, Joshua Smith, Julien Brun, Tessa Francis, Jacob Eurich, et al.. If you build it, they will come: coastal amenities facilitate human engagement in marine protected areas. People and Nature, 2023, https://hal.science/hal-04178594v1
2023
François Munoz, Christopher A Klausmeier, Pierre Gaüzère, Gaurav Kandlikar, Elena Litchman, et al.. The ecological causes of functional distinctiveness in communities. Ecology Letters, 2023, 26 (8), pp.1452-1465. https://hal.inrae.fr/hal-04137129v1
2023
Trisha B. Atwood, Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, et al.. Reply to: Quantifying the carbon benefits of ending bottom trawling. Nature, 2023, 617 (7960), pp.E3-E5. https://hal.science/hal-04204054v1
2023
Laetitia Mathon, Virginie Marques, Stéphanie Manel, Camille Albouy, Marco Andrello, et al.. The distribution of coastal fish eDNA sequences in the Anthropocene. Global Ecology and Biogeography, 2023, https://hal.umontpellier.fr/hal-04146566v1
2023
Mattia Ghilardi, Michael A Salter, Valeriano Parravicini, Sebastian C A Ferse, Tim Rixen, et al.. Temperature, species identity and morphological traits predict carbonate excretion and mineralogy in tropical reef fishes. Nature Communications, 2023, 14 (1), pp.985. https://univ-perp.hal.science/hal-04152551v1
2023
Mickael Heudier, David Mouillot, Laura Mannocci. Assessing the effects of coral reef habitat and marine protected areas on threatened megafauna using aerial surveys. Aquatic Conservation: Marine and Freshwater Ecosystems, 2023, https://hal.umontpellier.fr/hal-03994893v1
2023
Raphael Seguin, David Mouillot, Joshua Cinner, Rick Stuart Smith, Eva Maire, et al.. Towards process-oriented management of tropical reefs in the anthropocene. Nature Sustainability, 2023, 6 (2), pp.148-157. https://hal.umontpellier.fr/hal-03858373v1
2023
Agnès Duhamet, Camille Albouy, Virginie Marques, Stéphanie Manel, David Mouillot. The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding. Ecology and Evolution, 2023, 13 (1), pp.e9672. https://hal.umontpellier.fr/hal-04032735v1
2023
Catalina Pimiento, Camille Albouy, Daniele Silvestro, Théophile L. Mouton, Laure Velez, et al.. Functional diversity of sharks and rays is highly vulnerable and supported by unique species and locations worldwide. Nature Communications, 2023, 14 (1), pp.7691. https://hal.umontpellier.fr/hal-04492197v1
2023
Nadia Faure, Stéphanie Manel, Bastien Macé, Véronique Arnal, Nacim Guellati, et al.. An environmental DNA assay for the detection of Critically Endangered angel sharks (Squatina spp.). Aquatic Conservation: Marine and Freshwater Ecosystems, 2023, https://hal.umontpellier.fr/hal-04144473v1
2023
Joshua Smith, Christopher Free, Cori Lopazanski, Julien Brun, Clarissa Anderson, et al.. A marine protected area network does not confer community structure resilience to a marine heatwave across coastal ecosystems. Global Change Biology, 2023, 29 (19), pp.5634-5651. https://hal.science/hal-04173111v1
2023
Laura Benestan, Nicolas Loiseau, Pierre-Edouard Guerin, Angel Pérez-Ruzafa, Aitor Forcada, et al.. Contrasting influence of seascape, space and marine reserves on genomic variation in multiple species. Ecography, 2023, 2023 (1), https://hal.umontpellier.fr/hal-03990321v1
2023
Stéphanie Manel, Emilie Boulanger, Laura Benestan, David Mouillot, Alicia Dalongeville. Revisiting long-distance dispersal in a coastal marine fish. Ecography, 2023, pp.e06867. https://hal.umontpellier.fr/hal-04262649v1
2023
Marion Muff, Mélissa Jaquier, Virginie Marques, Laurent Ballesta, Julie Deter, et al.. Environmental DNA highlights fish biodiversity in mesophotic ecosystems. Environmental DNA, 2023, 5 (1), pp.56-72. https://hal.science/hal-04118681v1
2023
Shona Murray, Jessica J. Meeuwig, Christopher D. H. Thompson, David Mouillot. Identifying the drivers of silky shark distribution and an evaluation of protection measures. Environmental Biology of Fishes, 2023, 106 (8), pp.1693--1713. https://hal.umontpellier.fr/hal-04262725v1
2023
David Mouillot, Suzie Derminon, Gaël Mariani, Inna Senina, Jean-Marc Fromentin, et al.. Industrial fisheries have reversed the carbon sequestration by tuna carcasses into emissions. Global Change Biology, 2023, https://hal.umontpellier.fr/hal-04151775v1
2023
Jessica Zamborain-Mason, Joshua E. Cinner, M. Aaron Macneil, Nicholas A. J. Graham, Andrew S. Hoey, et al.. Sustainable reference points for multispecies coral reef fisheries. Nature Communications, 2023, 14 (1), pp.5368. https://hal.umontpellier.fr/hal-04313528v1
2022
Benjamin Flück, Laëtitia Mathon, Stéphanie Manel, Alice Valentini, Tony Dejean, et al.. Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem. Scientific Reports, 2022, 12 (1), pp.10247. https://hal.umontpellier.fr/hal-03824009v1
2022
Alicia Dalongeville, Emilie Boulanger, Virginie Marques, Eric Charbonnel, Virginie Hartmann, et al.. Benchmarking eleven biodiversity indicators based on environmental DNA surveys: More diverse functional traits and evolutionary lineages inside marine reserves. Journal of Applied Ecology, 2022, 59 (11), pp.2803-2813. https://hal.science/hal-03892475v1
2022
Camille Mellin, Christina Hicks, Damien Fordham, Christopher Golden, Marian Kjellevold, et al.. Safeguarding nutrients from coral reefs under climate change. Nature Ecology & Evolution, 2022, 6 (12), pp.1808-1817. https://hal.umontpellier.fr/hal-03860643v1
2022
Jean‐baptiste Juhel, Virginie Marques, Rizkie Satriya Utama, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Estimating the extended and hidden species diversity from environmental DNA in hyper‐diverse regions. Ecography, 2022, 2022 (10), pp.e06299. https://hal.umontpellier.fr/hal-03823160v1
2022
Arnaud Auber, Conor Waldock, Anthony Maire, Eric Goberville, Camille Albouy, et al.. A functional vulnerability framework for biodiversity conservation. Nature Communications, 2022, 13 (1), pp.4774. https://hal.umontpellier.fr/hal-03773552v1
2022
Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, Trisha B. Atwood, et al.. Reply to: A path forward for analysing the impacts of marine protected areas. Nature, 2022, 607 (7917), pp.E3-E4. https://hal.science/hal-04203858v1
2022
Loïc Sanchez, Emilie Boulanger, Véronique Arnal, Pierre Boissery, Alicia Dalongeville, et al.. Ecological indicators based on quantitative eDNA metabarcoding: the case of marine reserves. Ecological Indicators, 2022, 140, pp.108966. https://hal.science/hal-03993372v1
2022
Juliette Langlois, François Guilhaumon, Florian Baletaud, Nicolas Casajus, Cédric de Almeida Braga, et al.. The aesthetic value of reef fishes is globally mismatched to their conservation priorities. PLoS Biology, 2022, 20 (6), pp.e3001640. https://hal.umontpellier.fr/hal-03695941v1
2022
Emilie Boulanger, Laura Benestan, Pierre-Edouard Guérin, Alicia Dalongeville, David Mouillot, et al.. Climate differently influences the genomic patterns of two sympatric marine fish species. Journal of Animal Ecology, 2022, Understanding climate change response in the age of genomics, 91 (6), pp.1180-1195. https://hal.umontpellier.fr/hal-03589729v1
2022
Joshua Cinner, Jessica Zamborain-Mason, Eva Maire, Andrew Hoey, Nicholas A.J. Graham, et al.. Linking key human-environment theories to inform the sustainability of coral reefs. Current Biology, 2022, 32 (12), pp.2610-2620. https://hal.science/hal-03798539v1
2022
Laura Mannocci, Sébastien Villon, Marc Chaumont, Nacim Guellati, Nicolas Mouquet, et al.. Leveraging social media and deep learning to detect rare megafauna in video surveys. Conservation Biology, 2022, 36 (1), pp.e13798. https://hal.science/hal-03405365v1
2022
Léo Delalandre, Pierre Gaüzère, Wilfried Thuiller, Marc Cadotte, Nicolas Mouquet, et al.. Functionally distinct tree species support long-term productivity in extreme environments. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1967), pp.20211694. https://hal.umontpellier.fr/hal-03622233v1
2022
Camille Magneville, Nicolas Loiseau, Camille Albouy, Nicolas Casajus, Thomas Claverie, et al.. mFD: an R package to compute and illustrate the multiple facets of functional diversity. Ecography, 2022, 2022 (1), https://hal.umontpellier.fr/hal-03566638v1
2022
Ignacio Pita, Raphael Seguin, Yunne-Jai Shin, Pauline Viguier, Thibault Catry, et al.. SAR Satellite Imagery Reveals the Impact of the Covid-19 Crisis on Ship Frequentation in the French Mediterranean Waters. Frontiers in Marine Science, 2022, 9, pp.845419. https://hal.science/hal-04363494v1
2022
Laëtitia Mathon, Virginie Marques, David Mouillot, Camille Albouy, Marco Andrello, et al.. Cross-ocean patterns and processes in fish biodiversity on coral reefs through the lens of eDNA metabarcoding. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1973), pp.20220162. https://hal.umontpellier.fr/hal-03669624v1
2022
Philipp Brun, Cyrille Violle, David Mouillot, Nicolas Mouquet, Brian J. Enquist, et al.. Plant community impact on productivity: Trait diversity or key(stone) species effects?. Ecology Letters, 2022, 25 (4), pp.913-925. https://hal.umontpellier.fr/hal-03589743v1
2022
Lila Desgarnier, David Mouillot, Laurent Vigliola, Marc Chaumont, Laura Mannocci. Putting eagle rays on the map by coupling aerial video-surveys and deep learning. Biological Conservation, 2022, 267, pp.#109494. https://hal.umontpellier.fr/hal-03708534v1
2022
Germain Boussarie, Paolo Momigliano, William D. Robbins, Lucas Bonnin, Jean-Francois Cornu, et al.. Identifying barriers to gene flow and hierarchical conservation units from seascape genomics: a modelling framework applied to a marine predator. Ecography, 2022, pp.e06158. https://hal.umontpellier.fr/hal-03669632v1
2022
Florian Baletaud, Antoine Gilbert, David Mouillot, Jean-Marie Come, Laurent Vigliola. Baited video reveal fish diversity in the vast inter-reef habitats of a marine tropical lagoon. Marine Biodiversity, 2022, 52 (2), pp.16. https://hal.umontpellier.fr/hal-03622228v1
2022
Anaëlle Durfort, Gaël Mariani, Vivitskaia Tulloch, Matthew S Savoca, Marc Troussellier, et al.. Recovery of carbon benefits by overharvested baleen whale populations is threatened by climate change. Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1986), pp.20220375. https://hal.science/hal-03858200v1
2022
Jeaneth Machicao, Imed Riadh Farah, Leonardo Meneguzzi, Corrêa Pedro Luiz Pizzigatti, Alison Specht, et al.. Mitigation Strategies to Improve Reproducibility of Poverty Estimations From Remote Sensing Images Using Deep Learning. Earth and Space Science, 2022, 9 (8), pp.e2022EA002379. https://hal.science/hal-03761874v1
2022
Madeline Steinberg, Jean-Baptiste Juhel, Virginie Marques, Clara Péron, Régis Hocdé, et al.. Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems. Marine Biology, 2022, 169 (1), pp.15. https://hal.umontpellier.fr/hal-03566643v1
2022
Cameron A. J. Walsh, Paolo Momigliano, Germain Boussarie, William D. Robbins, Lucas Bonnin, et al.. Genomic insights into the historical and contemporary demographics of the grey reef shark. Heredity, 2022, https://hal.umontpellier.fr/hal-03656474v1
2021
Conor Waldock, Rick D. Stuart-Smith, Camille Albouy, William W. L. Cheung, Graham J. Edgar, et al.. A quantitative review of abundance-based species distribution models. Ecography, 2021, 2022 (44), pp.1-18. https://hal.umontpellier.fr/hal-03566641v1
2021
Andrea Polanco Fernández, Maria Mutis Martinezguerra, Virginie Marques, Francisco Villa‐navarro, Giomar Helena Borrero Pérez, et al.. Detecting aquatic and terrestrial biodiversity in a tropical estuary using environmental DNA. Biotropica, 2021, 53 (6), pp.1606-1619. https://hal.science/hal-04203573v1
2021
Laëtitia Mathon, Alice Valentini, Pierre-Edouard Guerin, Eric Normandeau, Cyril Noël, et al.. Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification. Molecular Ecology Resources, 2021, 21 (7), pp.2565-2579. https://hal.umontpellier.fr/hal-03415607v1
2021
Matthew Mclean, David Mouillot, Aurore Maureaud, Tarek Hattab, M. Aaron Macneil, et al.. Disentangling tropicalization and deborealization in marine ecosystems under climate change. Current Biology, 2021, https://hal.science/hal-03338639v1
2021
David Mouillot, Nicolas Loiseau, Matthias Grenié, Adam Algar, Michele Allegra, et al.. The dimensionality and structure of species trait spaces. Ecology Letters, 2021, 24 (9), pp.1988-2009. https://hal.science/hal-03405358v1
2021
Lucas Bonnin, David Mouillot, Germain Boussarie, William D. Robbins, Jeremy J. Kiszka, et al.. Recent expansion of marine protected areas matches with home range of grey reef sharks. Scientific Reports, 2021, 11 (1), pp.14221. https://hal.umontpellier.fr/hal-03411088v1
2021
Sébastien Villon, Corina Iovan, Morgan Mangeas, Thomas Claverie, David Mouillot, et al.. Automatic underwater fish species classification with limited data using few-shot learning. Ecological Informatics, 2021, 63, pp.101320. https://hal.umontpellier.fr/hal-03415715v1
2021
Laura Benestan, Katharina Fietz, Nicolas Loiseau, Pierre-Edouard Guerin, Elena Trofimenko, et al.. Restricted dispersal in a sea of gene flow. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1951), pp.20210458. https://hal.umontpellier.fr/hal-03411085v1
2021
Emilie Boulanger, Nicolas Loiseau, Alice Valentini, Véronique Arnal, Pierre Boissery, et al.. Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1949), pp.20210112. https://univ-perp.hal.science/hal-04015973v1
2021
Matthew Mclean, Rick Stuart-Smith, Sébastien Villéger, Arnaud Auber, Graham Edgar, et al.. Trait similarity in reef fish faunas across the world’s oceans. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (12), pp.e2012318118. https://hal.science/hal-03435832v1
2021
Fabien Leprieur, Loic Pellissier, David Mouillot, Theo Gaboriau. Influence of historical changes in tropical reef habitat on the diversification of coral reef fishes. Scientific Reports, 2021, 11 (1), pp.20731. https://hal.umontpellier.fr/hal-03475051v1
2021
Jean-Baptiste Juhel, Virginie Marques, Andrea Polanco Fernandez, Giomar H. Borrero-Perez, Maria Mutis Martinezguerra, et al.. Detection of the elusive Dwarf sperm whale (Kogia sima) using environmental DNA at Malpelo island (Eastern Pacific, Colombia). Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03413614v1
2021
V. Parravicini, M. G. Bender, Sébastien Villéger, Fabien Leprieur, L. Pellissier, et al.. Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1961), pp.20211712. https://hal.umontpellier.fr/hal-03475052v1
2021
Andrea Polanco Fernández, Virginie Marques, Fabian Fopp, Jean-Baptiste Juhel, Giomar Helena Borrero-Pérez, et al.. Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes. Environmental DNA, 2021, The future of biodiversity monitoring and conservation utilizing environmental DNA, 3 (1), pp.142-156. https://hal.inrae.fr/hal-03810224v1
2021
Concepcion Marcos, David Diaz, Katharina Fietz, Aitor Forcada, Amanda Ford, et al.. Reviewing the Ecosystem Services, Societal Goods, and Benefits of Marine Protected Areas. Frontiers in Marine Science, 2021, 8, pp.613819. https://hal.umontpellier.fr/hal-03415610v1
2021
Salomé Stauffer, Meret Jucker, Thomas Keggin, Virginie Marques, Marco Andrello, et al.. How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?. Ecology and Evolution, 2021, https://hal.umontpellier.fr/hal-03415700v1
2021
Giulia Francesca Azzurra Donati, Niklaus Zemp, Stephanie Manel, Maude Poirier, Thomas Claverie, et al.. Species ecology explains the spatial components of genetic diversity in tropical reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1959), pp.20211574. https://hal.umontpellier.fr/hal-03475048v1
2021
Nicolas Loiseau, Wilfried Thuiller, Rick Stuart-Smith, Vincent Devictor, Graham Edgar, et al.. Maximizing regional biodiversity requires a mosaic of protection levels. PLoS Biology, 2021, 19 (5), pp.e3001195. https://cnrs.hal.science/hal-03346482v1
2021
Angela Randazzo-Eisemann, Jesus Ernesto Arias-Gonzalez, Laure Velez, Melanie Mcfield, David Mouillot. The last hotspots of structural complexity as conservation targets in the Mesoamerican Coral Reef. Biological Conservation, 2021, 256, https://hal.umontpellier.fr/hal-04934784v1
2021
David Mouillot, Jean-Baptiste Juhel, Virginie Marques, Tristan Milhau, Camille Albouy, et al.. GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding. Diversity and Distributions, 2021, Environmental DNA‐based biodiversity assessment and conservation management in the Anthropocene, 27 (10), pp.1880-1892. https://hal.umontpellier.fr/hal-03415605v1
2021
Enric Sala, Juan Mayorga, Darcy Bradley, Reniel B. Cabral, Trisha B. Atwood, et al.. Protecting the global ocean for biodiversity, food and climate. Nature, 2021, https://hal.umontpellier.fr/hal-03415689v1
2021
Virginie Marques, Paul Castagne, Andrea Polanco Fernandez, Giomar Helena Borrero-Perez, Régis Hocdé, et al.. Use of environmental DNA in assessment of fish functional and phylogenetic diversity. Conservation Biology, 2021, https://hal.umontpellier.fr/hal-03451172v1
2021
Juliette Murgier, Matthew Mclean, Anthony Maire, David Mouillot, Nicolas Loiseau, et al.. Rebound in functional distinctiveness following warming and reduced fishing in the North Sea. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1942), pp.20201600. https://hal.umontpellier.fr/hal-03415629v1
2021
Jeneen Hadj-Hammou, David Mouillot, Nicholas A. J. Graham. Response and Effect Traits of Coral Reef Fish. Frontiers in Marine Science, 2021, 8, pp.640619. https://hal.umontpellier.fr/hal-03413526v1
2021
Ignacio Pita, David Mouillot, Fabien Moullec, Yunne-Jai Shin. Contrasted patterns in climate change risk for Mediterranean fisheries. Global Change Biology, 2021, https://hal.umontpellier.fr/hal-03415637v1
2020
Stéphanie Manel, Pierre-Edouard Guerin, David Mouillot, Simon Blanchet, Laure Velez, et al.. Global determinants of freshwater and marine fish genetic diversity. Nature Communications, 2020, 11 (1), pp.692. https://ut3-toulouseinp.hal.science/hal-03043658v1
2020
Sébastien Villon, David Mouillot, Marc Chaumont, Gérard Subsol, Thomas Claverie, et al.. A new method to control error rates in automated species identification with deep learning algorithms. Scientific Reports, 2020, 10 (1), https://hal-lirmm.ccsd.cnrs.fr/lirmm-03002261v1
2020
David Mouillot, Laure Velez, Eva Maire, Alizée Masson, Christina Hicks, et al.. Global correlates of terrestrial and marine coverage by protected areas on islands. Nature Communications, 2020, 11 (1), https://hal.science/hal-02993050v1
2020
Nicolas Loiseau, Nicolas Mouquet, Nicolas Casajus, Matthias Grenié, Maya Guéguen, et al.. Global distribution and conservation status of ecologically rare mammal and bird species. Nature Communications, 2020, 11 (1), https://cnrs.hal.science/hal-02961326v1
2020
Virginie Marques, Pierre-Edouard Guerin, Mathieu Rocle, Alice Valentini, Stephanie Manel, et al.. Blind assessment of vertebrate taxonomic diversity across spatial scales by clustering environmental DNA metabarcoding sequences. Ecography, 2020, pp.1779-1790. https://hal.umontpellier.fr/hal-03411045v1
2020
Jean-Baptiste Juhel, Rizkie Satriya Utama, Virginie Marquès, Indra Bayu Vimono, Hagi Yulia Sugeha, et al.. Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle. Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1930), pp.20200248. https://hal.science/hal-02900375v1
2020
Emilie Boulanger, Alicia Dalongeville, Marco Andrello, David Mouillot, Stephanie Manel. Spatial graphs highlight how multi-generational dispersal shapes landscape genetic patterns. Ecography, 2020, 43, pp.1167-1179. https://hal.umontpellier.fr/hal-03404999v1
2020
Joshua Cinner, Jessica Zamborain-Mason, Georgina Gurney, Nicholas Graham, M. Aaron Macneil, et al.. Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world. Science, 2020, 368 (6488), pp.307-311. https://hal.science/hal-03090286v1
2020
Camille Albouy, Valentine Delattre, Giulia Donati, Thomas Frölicher, Severine Albouy-Boyer, et al.. Global vulnerability of marine mammals to global warming. Scientific Reports, 2020, 10 (1), https://hal.umontpellier.fr/hal-03403188v1
2020
Kadar Kadarusman, Hagi Yulia Sugeha, Laurent Pouyaud, Régis Hocdé, Intanurfemi Hismayasari, et al.. A thirteen-million-year divergence between two lineages of Indonesian coelacanths. Scientific Reports, 2020, 10 (1), https://ird.hal.science/ird-02438220v1
2020
Alienor Jeliazkov, Darko Mijatovic, Stéphane Chantepie, Nigel Andrew, Raphaël Arlettaz, et al.. A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data , 2020, 7 (1), pp.6. https://univ-lyon1.hal.science/hal-02438887v1
2020
Gaël Mariani, William Cheung, Arnaud Lyet, Enric Sala, Juan Mayorga, et al.. Let more big fish sink: Fisheries prevent blue carbon sequestration—half in unprofitable areas. Science Advances , 2020, 6 (44), pp.eabb4848. https://hal.science/hal-02993112v1
2020
Eva Maire, Stephanie d'Agata, Catherine Aliaume, David Mouillot, Emily S. Darling, et al.. Disentangling the complex roles of markets on coral reefs in northwest Madagascar. Ecology and Society, 2020, 25 (3), pp.23. https://hal.umontpellier.fr/hal-03411039v1
2020
Fraser A. Januchowski-Hartley, Laurent Vigliola, Eva Maire, Michel Kulbicki, David Mouillot. Low fuel cost and rising fish price threaten coral reef wilderness. Conservation Letters, 2020, 13 (3), pp.e12706. https://hal.umontpellier.fr/hal-03410890v1
2019
Lauric Thiault, Camilo Mora, Joshua Cinner, William Cheung, Nicholas Graham, et al.. Escaping the perfect storm of simultaneous climate change impacts on agriculture and marine fisheries. Science Advances , 2019, 5 (11), pp.eaaw9976. https://univ-perp.hal.science/hal-02432827v2
2019
Matthew Mclean, David Mouillot, Sébastien Villéger, Nicholas a J Graham, Arnaud Auber. Interspecific differences in environmental response blur trait dynamics in classic statistical analyses. Marine Biology, 2019, 166 (12), https://hal.science/hal-03099050v1
2019
Emily S Darling, Tim R Mcclanahan, Joseph Maina, Georgina G Gurney, Nicholas a J Graham, et al.. Strategic conservation and management of coral reefs in the Anthropocene. Nature Ecology & Evolution, 2019, 3 (9), pp.1341-1350. https://hal.science/hal-03033541v1
2019
Tom Letessier, David Mouillot, Phil Bouchet, Laurent Vigliola, Marjorie Fernandes, et al.. Remote reefs and seamounts are the last refuges for marine predators across the Indo-Pacific. PLoS Biology, 2019, 17 (8), pp.e3000366. https://hal.umontpellier.fr/hal-02413901v1
2019
Matthew Mclean, Arnaud Auber, Nicholas Graham, Peter Houk, Sebastien Villeger, et al.. Trait structure and redundancy determine sensitivity to disturbance in marine fish communities. Global Change Biology, 2019, 25 (10), pp.3424-3437. https://hal.science/hal-02324196v1
2019
Stéphanie Manel, Nicolas Loiseau, Marco Andrello, Katharina Fietz, Raquel Goñi, et al.. Long-Distance Benefits of Marine Reserves: Myth or Reality?. Trends in Ecology & Evolution, 2019, 34 (4), pp.342-354. https://univ-perp.hal.science/hal-02331101v1
2019
Florent Mazel, Matthew W. Pennell, Marc W. Cadotte, Sandra Diaz, Giulio Valentino Dalla Riva, et al.. Reply to: \"Global conservation of phylogenetic diversity captures more than just functional diversity\". Nature Communications, 2019, 10, pp.858. https://hal.science/hal-02439689v1
2019
Jean-Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B Letessier, Jessica J Meeuwig, et al.. Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior. Scientific Reports, 2019, 9, pp.2897. https://hal.umontpellier.fr/hal-02413866v1
2019
Matthew Mclean, David Mouillot, Martin Lindegren, Sebastien Villeger, Georg Engelhard, et al.. Fish communities diverge in species but converge in traits over three decades of warming. Global Change Biology, 2019, 25 (11), pp.3972--3984. https://hal.science/hal-02439731v1
2019
Matthew J. Mclean, David Mouillot, Nicolas Goascoz, Ivan Schlaich, Arnaud Auber. Functional reorganization of marine fish nurseries under climate warming. Global Change Biology, 2019, 25 (2), pp.660--674. https://hal.science/hal-02439728v1
2019
Fabien Leprieur, Theo Gaboriau, Camille Albouy, Patrice Descombes, David Mouillot, et al.. Ecological constraints coupled with deep-time habitat dynamics predict the latitudinal diversity gradient in reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2019, 286 (1911), pp.20191506. https://hal.science/hal-02434172v1
2019
Lucas Bonnin, William D. Robbins, Germain Boussarie, Jeremy J. Kiszka, Laurent Dagorn, et al.. Repeated long-range migrations of adult males in a common Indo-Pacific reef shark. Coral Reefs, 2019, https://hal.science/hal-02403275v1
2018
Alicia Dalongeville, Marco Andrello, David Mouillot, Stephane Lobreaux, Marie-Josee Fortin, et al.. Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale. Evolutionary Applications, 2018, 11 (8), pp.1437-1447. https://hal.umontpellier.fr/hal-02002253v1
2018
Théo Gaboriau, Fabien Leprieur, David Mouillot, Nicolas Hubert. Influence of the geography of speciation on current patterns of coral reef fish biodiversity across the Indo-Pacific. Ecography, 2018, 41 (8), pp.1295-1306. https://hal.science/hal-01959407v1
2018
Florent Mazel, Matthew W. Pennell, Marc W. Cadotte, Sandra Diaz, Giulio Valentino Dalla Riva, et al.. Prioritizing phylogenetic diversity captures functional diversity unreliably. Nature Communications, 2018, 9, https://hal.umontpellier.fr/hal-02002355v1
2018
Germain Boussarie, Judith Bakker, Owen S. Wangensteen, Stefano Mariani, Lucas Bonnin, et al.. Environmental DNA illuminates the dark diversity of sharks. Science Advances , 2018, 4 (5), pp.1-8. https://hal.science/hal-01826693v1
2018
Alicia Dalongeville, Laura Benestan, David Mouillot, Stephane Lobreaux, Stephanie Manel. Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus). BMC Genomics, 2018, 19 (1), https://hal.science/hal-01826711v1
2018
Jean-Baptiste Juhel, Laurent Vigliola, David Mouillot, Michel Kulbicki, Tom B. Letessier, et al.. Reef accessibility impairs the protection of sharks. Journal of Applied Ecology, 2018, 55 (2), pp.673--683. https://hal.science/hal-01826718v1
2018
Matthias Grenié, David Mouillot, Sebastien Villeger, Pierre Denelle, Caroline M. Tucker, et al.. Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation. Biological Conservation, 2018, 226, pp.288-299. https://hal.umontpellier.fr/hal-02002180v1
2018
Matthew Mclean, David Mouillot, Martin Lindegren, Georg Engelhard, Sebastien Villeger, et al.. A Climate-Driven Functional Inversion of Connected Marine Ecosystems. Current Biology, 2018, 28 (22), pp.3654. https://hal.science/hal-01994182v1
2018
Eva Maire, Sebastien Villeger, Nicholas A. J. Graham, Andrew S. Hoey, Joshua Cinner, et al.. Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific. Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1883), https://hal.umontpellier.fr/hal-02002283v1
2018
Matthew Mclean, David Mouillot, Arnaud Auber. Ecological and life history traits explain a climate-induced shift in a temperate marine fish community. Marine Ecology Progress Series, 2018, 606, pp.175-186. https://hal.science/hal-01994183v1
2018
Joshua Cinner, Eva Maire, Cindy Huchery, M. Aaron Macneil, Graham Graham, et al.. Gravity of human impacts mediates coral reef conservation gains. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (27), pp.E6116-E6125. https://hal.umontpellier.fr/hal-01824520v1
2018
Rafael P. Leitao, Jansen Zuanon, David Mouillot, Cecilia G. Leal, Robert M. Hughes, et al.. Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams. Ecography, 2018, 41 (1), pp.219--232. https://hal.science/hal-01826757v1
2018
Rafael A. Magris, Marco Andrello, Robert L. Pressey, David Mouillot, Alicia Dalongeville, et al.. Biologically representative and well-connected marine reserves enhance biodiversity persistence in conservation planning. Conservation Letters, 2018, 11 (4), pp.e12439. https://hal.umontpellier.fr/hal-02002276v1
2018
David Mouillot, Sébastien Villon, Marc Chaumont, Gérard Subsol, Emily Darling, et al.. A Deep learning method for accurate and fast identification of coral reef fishes in underwater images. Ecological Informatics, 2018, 48, pp.238-244. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01884005v1
2017
Cyrille Violle, Wilfried Thuiller, Nicolas Mouquet, François Munoz, Nathan J.B. Kraft, et al.. A Common Toolbox to Understand, Monitor or Manage Rarity? A Response to Carmona et al.. Trends in Ecology & Evolution, 2017, 32 (12), pp.891-893. https://hal.science/hal-01932911v1
2017
Sébastien Villéger, Sébastien Brosse, Maud Mouchet, David Mouillot, Michael J. Vanni. Functional ecology of fish: current approaches and future challenges. Aquatic Sciences - Research Across Boundaries, 2017, 79 (4), pp.783--801. https://hal.science/hal-01932917v1
2017
Arthur Escalas, Marc Troussellier, Tong Yuan, Thierry Bouvier, Corinne Bouvier, et al.. Functional diversity and redundancy across fish gut, sediment and water bacterial communities. Environmental Microbiology, 2017, 19 (8), pp.3268 - 3282. https://hal.umontpellier.fr/hal-01928275v1
2017
Mariana G. Bender, Fabien Leprieur, David Mouillot, Michel Kulbicki, Valeriano Parravicini, et al.. Isolation drives taxonomic and functional nestedness in tropical reef fish faunas. Ecography, 2017, 40 (3), pp.425--435. https://hal.science/hal-01928118v1
2017
Claire Jacquet, David Mouillot, Michel Kulbicki, Dominique Gravel. Extensions of Island Biogeography Theory predict the scaling of functional trait composition with habitat area and isolation. Ecology Letters, 2017, 20 (2), pp.135--146. https://hal.science/hal-01927194v1
2017
Judith Bakker, Owen Wangensteen, Demian Chapman, Germain Boussarie, Dayne Buddo, et al.. Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact. Scientific Reports, 2017, 7 (1), pp.16886. https://hal.umontpellier.fr/hal-01929216v1
2017
Eduardo Ottimofiore, Camille Albouy, Fabien Leprieur, Patrice Descombes, Michel Kulbicki, et al.. Responses of coral reef fishes to past climate changes are related to life-history traits. Ecology and Evolution, 2017, 7 (6), pp.1996-2005. https://hal.science/hal-01928119v1
2017
Marco Andrello, François Guilhaumon, Camille Albouy, Valeriano Parravicini, Joeri Scholtens, et al.. Global mismatch between fishing dependency and larval supply from marine reserves. Nature Communications, 2017, 8, pp.16039. https://hal.umontpellier.fr/hal-01851377v1
2017
Marc Troussellier, Arthur Escalas, Thierry Bouvier, David Mouillot. Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity. Frontiers in Microbiology, 2017, 8, pp.947. https://hal.umontpellier.fr/hal-01928018v1
2016
Stephanie d'Agata, Laurent Vigliola, Nicholas Graham, Laurent Wantiez, Valeriano Parravicini, et al.. Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1844), https://hal.umontpellier.fr/hal-01926552v1
2016
Nathalie Seddon, Georgina Mace, Shahid Naeem, Joseph Tobias, Alex Pigot, et al.. Biodiversity in the Anthropocene: prospects and policy. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1844), https://hal.umontpellier.fr/hal-01929249v1
2016
Fabien Leprieur, Simona Colosio, Patrice Descombes, Valeriano Parravicini, Michel Kulbicki, et al.. Historical and contemporary determinants of global phylogenetic structure in tropical reef fish faunas. Ecography, 2016, 39 (9), pp.825--835. https://hal.science/hal-01925510v1
2016
Arnaud Catherine, Selma Maloufi, David Mouillot, Marc Troussellier, Cecile Bernard. Patterns and multi-scale drivers of phytoplankton species richness in temperate peri-urban lakes. Science of the Total Environment, 2016, 559, pp.74 - 83. https://hal.umontpellier.fr/hal-01923947v1
2016
Joshua E. Cinner, Cindy Huchery, M. Aaron Macneil, Nicholas A.J. Graham, Tim R. Mcclanahan, et al.. Bright spots among the world’s coral reefs. Nature, 2016, 535 (7612), pp.416--419. https://hal.science/hal-01925512v1
2016
Selma Maloufi, Arnaud Catherine, David Mouillot, Clarisse Louvard, Alain Couté, et al.. Environmental heterogeneity among lakes promotes hyper β-diversity across phytoplankton communities. Freshwater Biology, 2016, 61 (5), pp.633 - 645. https://hal.umontpellier.fr/hal-01923982v1
2016
Alicia Dalongeville, Marco Andrello, David Mouillot, Camille Albouy, Stéphanie Manel. Ecological traits shape genetic diversity patterns across the Mediterranean Sea: a quantitative review on fishes. Journal of Biogeography, 2016, 43 (4), pp.845-857. https://hal.science/hal-01925270v1
2016
Eva Maire, Joshua Cinner, Laure Velez, Cindy Huchery, Camilo Mora, et al.. How accessible are coral reefs to people? A global assessment based on travel time. Ecology Letters, 2016, 19 (4), pp.351--360. https://hal.science/hal-01925269v1
2016
Haizea Jimenez, Pascal Dumas, David Mouillot, Lionel Bigot, Jocelyne Ferraris. Harvesting effects on functional structure and composition of tropical invertebrate assemblages. ICES Journal of Marine Science, 2016, 73 (2), pp.420 - 428. https://hal.univ-reunion.fr/hal-01908217v1
2016
Rafael P. Leitão, Jansen Zuanon, Sébastien Villéger, Stephen E. Williams, Christopher Baraloto, et al.. Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1828), https://hal.science/hal-01532639v1
2016
D Mouillot, V Parravicini, David R. Bellwood, F Leprieur, D Huang, et al.. Global marine protected areas do not secure the evolutionary history of tropical corals and fishes. Nature Communications, 2016, 7, https://univ-perp.hal.science/hal-01282920v1
2016
Fabien Leprieur, Patrice Descombes, Théo Gaboriau, Peter Cowman, Valeriano Parravicini, et al.. Plate tectonics drive tropical reef biodiversity dynamics. Nature Communications, 2016, 7, pp.11461. https://hal.umontpellier.fr/hal-01922802v1
2015
Camille Albouy, Fabien Leprieur, François Le Loc’h, Nicolas Mouquet, Christine Meynard, et al.. Projected impacts of climate warming on the functional and phylogenetic components of coastal Mediterranean fish biodiversity. Ecography, 2015, 38 (7), pp.681-689. https://hal.umontpellier.fr/hal-01922190v1
2015
Marco Andrello, Martin Nilsson Jacobi, Stéphanie Manel, Wilfried Thuiller, David Mouillot. Extending networks of protected areas to optimize connectivity and population growth rate. Ecography, 2015, 38 (3), pp.273 - 282. https://hal.umontpellier.fr/hal-01841278v1
2015
Marco Andrello, David Mouillot, Samuel Somot, Wilfried Thuiller, Stéphanie Manel. Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas. Diversity and Distributions, 2015, 21 (2), pp.139 - 150. https://hal.umontpellier.fr/hal-01841284v1
2015
Boris R. Krasnov, Georgy I. Shenbrot, Irina S. Khokhlova, Michal Stanko, Serge Morand, et al.. Assembly rules of ectoparasite communities across scales: combining patterns of abiotic factors, host composition, geographic space, phylogeny and traits. Ecography, 2015, 38 (2), pp.184-197. https://hal.umontpellier.fr/hal-03039087v1
2015
Marta Coll, Jeroen Steenbeek, Frida Ben Rais Lasram, David Mouillot, Philippe Cury. 'Low-hanging fruit' for conservation of marine vertebrate species at risk in the Mediterranean Sea: Priority areas to protect marine Mediterranean vertebrate species at risk. Global Ecology and Biogeography, 2015, 24 (2), pp.226--239. https://hal.umontpellier.fr/hal-01840071v1
2015
Nicholas Graham, Simon Jennings, M. Aaron Macneil, David Mouillot, Shaun Wilson. Predicting climate-driven regime shifts versus rebound potential in coral reefs. Nature, 2015, 518 (7537), pp.94 - 97. https://hal.umontpellier.fr/hal-01841302v1
2015
Florent Mazel, Julien Renaud, François Guilhaumon, David Mouillot, Dominique Gravel, et al.. Mammalian phylogenetic diversity-area relationships at a continental scale.. Ecology, 2015, 96 (10), pp.2814-22. https://hal.science/hal-01930199v1
2015
Camille Albouy, Frida Ben Rais Lasram, Laure Velez, François Guilhaumon, Christine Meynard, et al.. FishMed: traits, phylogeny, current and projected species distribution of Mediterranean fishes, and environmental data. Ecology, 2015, 96 (8), pp.2312-2313. https://hal.science/hal-01605821v1
170 article(s)
Autres publications
2023
Clément Dorffer, Frédéric Jourdin, David Mouillot, Rodolphe Devillers, Ronan Fablet. Observation-only learning of 4DVarNet neural schemes for the reconstruction of sea surface turbidity dynamics from gappy satellite images. EGU 2023: European Geophysical Union, European Geophysical Union, Apr 2023, Vienna, Austria. pp.1-1, https://hal.science/hal-04363493v1
2022
Laura Mannocci, Frédérique Carcaillet, Marc Chaumont, Bérénice Givord-Coupeau, Corina Iovan, et al.. Artificial Intelligence and Social Networks Can Help to Protect the Famous Dugong. 2022, https://hal-lirmm.ccsd.cnrs.fr/lirmm-03824398v1
2022
Rodolphe Devillers, Alicia Dalongeville, Sébastien Desbureaux, Julia Girard, Laure Velez, et al.. Assessing the Long-Term Effects of Marine Protected Areas on Poverty: A 18-year Experiment in Tanzania. 12th WIOMSA Scientific Symposium, WIOMSA, Oct 2022, Port Elizabeth, South Africa. https://hal.science/hal-04363809v1
2022
Ali Ben Abbess, Leonardo Meneguzzi, Pedro Pizzigatti Corrêa, David Mouillot, Romain David, et al.. Checklist Strategies to Improve the Reproducibility of Deep Learning Experiments with an Illustration. RDA 19th Plenary Meeting, Part Of International Data Week, Jun 2022, Seoul, South Korea. , 2022, https://hal.science/hal-03738323v1
2022
Jeaneth Machicao, Ali Ben Abbes, Leandro Meneguzzi, Pedro Corrêa, Alison Specht, et al.. Reproducing Deep Learning experiments: common challenges and recommendations for improvement. RDA 19th Plenary Meeting, Part Of International Data Week, Jun 2022, Seoul, South Korea. , 2022, https://hal.science/hal-03719090v1
2021
Thomas Claverie, Marc Chaumont, Karen Godary-Dejean, Adrien Hereau, Lionel Lapierre, et al.. Coupling underwater autonomous vehicles and automatic video analysis for efficient monitoring of coral reef ecosystems: promises and challenges. ICRS 2021 - 15th International Coral Reef Symposium, Jul 2021, Bremen (virtual), Germany. https://hal-lirmm.ccsd.cnrs.fr/lirmm-03820865v1
2021
Alison Specht, Jeaneth Machicao, Pedro Corrêa, Rodolphe Devillers, Yasuhisa Kondo, et al.. The detection of socio-economic impacts of protected area creation. TERN Science Symposium 2021, Jul 2021, Online, Australia. pp.34-40, https://hal.science/hal-04371761v1
2019
David Mouillot, Stéphanie Manel. Indicateurs de l'état de santé des écosystèmes marins à partir de l'ADN environnemental. John Bandelier; Bernard Hubert; Catherine Jeandel; Philippe Lebaron; Michel Petit; Hélène Rey-Valette; Pierre Soler. Les dossiers d'Agropolis International n° 24 : Sciences marines et littorales en Occitanie, 24, Agropolis International, pp.92-92, 2019. https://hal.science/hal-04917935v1
2019
David Mouillot, Marco Andrello, Stéphanie Manel. L'impact du réseau d'AMP en Méditerranée sur la conservation et l'exploitation des ressources marines vivantes : exemple du mérou brun. John Bandelier; Bernard Hubert; Catherine Jeandel; Philippe Lebaron; Michel Petit; Hélène Rey-Valette; Pierre Soler. Les dossiers d'Agropolis International n° 24 : Sciences marines et littorales en Occitanie, 24, Agropolis International, pp.78-78, 2019. https://hal.science/hal-04917930v1
2018
Sébastien Villon, David Mouillot, Marc Chaumont, Emily Darling, Gérard Subsol, et al.. A deep learning algorithm for automatic identification of coral reef fish species on images. WCMB 2018 - 4th World Conference on Marine Biodiversity, May 2018, Montréal, Canada. https://hal-lirmm.ccsd.cnrs.fr/lirmm-01883997v1
2016
Sébastien Villon, Marc Chaumont, Gérard Subsol, Sébastien Villéger, Thomas Claverie, et al.. Coral reef fish detection and recognition in underwater videos by supervised machine learning : Comparison between Deep Learning and HOG+SVM methods. ACIVS 2016 - 17th International Conference on Advanced Concepts for Intelligent Vision Systems, Oct 2016, Lecce, Italy. https://hal.science/hal-01374123v1
2015
Corentin Abgrall, Matthieu Chauvat, Estelle Langlois, Mickael Hedde, David Mouillot, et al.. Variations et liens fonctionnels entre les compartiments épigés et endogés le long d’un gradient d’inondation. Colloque TEBIS (Traits Écologiques et Biologiques des Invertébrés du Sol), 4ème édition, Oct 2015, Rouen, France. https://hal.science/hal-02437858v1
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